Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1074 ATGGCGCTTACAAAACCAATTATGGGTTGTTCTTCATTGGTAGAGAGGTCCTTGTTTGTTCCTTCTTCCCCTCCATCGCTTACACGCCATGCTTTTCAACTCAAACAAACACGGTTCTCTGTTCCTTTTGAGAACACAAGAGTGGGGAGGTTGAGAAGGCCTTCGAAGTTTCCTGTGGCAGCTATAAGTGAAGATTTGATGAAGGGTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATCTTCTTCTTCAGTGTCTGTAGAGAAACCGGTGAAATTCAAGGTTAGAGCTGTGATCACAGTAAGGAACAAGATCAAGGAGGATTTGAAAGAGACCATTGTGAAGCATATTGATGCTTTAACTGACAGGATTGGAAGGAATGTTGTGCTTGAACTTGTTAGCACCGAGATTGATCCAAAAACCAAAGCTGCAAAGAAGAGTAATGAAGCAGTGCTGAAGGATTGGTCAAAGAAGTCCAATGTTAAAGCAGAGAGAGTTAATTACACAGCTGAATTCATAGTTGATTCCAACTTTGGAGAGCCAGGAGCTATTACTGTGACAAACAAACATCAGAAAGAGTTCTTCTTGGAAAGTATAACCATTGAAGGATTTGCCAGTGGACCAGTTCATTTCCCCTGCAACTCATGGGTACAAGCCAGAAAAGATCATCCTGGAAAGAGGATATTCTTTTCTAACAAGCCATGTTTACCGGGCGATACACCTGCTGGGCTTAGATTATTGAGGGAGAAAGAGCTGAGAAATCTCAGAGGTGATGGCAAAGGAGTTAGAAATTTATCTGATAGAATATACGACTATGACATATACAACGATTTGGGAAATCCAGATAAAGGAGTTGAACTTGCTAGACCAAATCTTGGGGGATCAGAAATGTATCCATACCCAAGACGGTGTCGTACTGGCCGTGAACCATCCGACACAGATATGTACGCAGAGAGTCGTGTGGAGAAGCCACAGCCTATGTATGTGCCTAGAGATGAACGTTTTGAGGAGTCTAAGCAGAACACATTCTCTGTGAAGAGGCTCAAAGCAGTGTTGCATAACTTGATTCCTGGCCTTAAGGCCAGCCTTTCTGCTAACAATCAAGATTTCAATGAATTCTCAGATGTTGATGGCCTTTATAGTGAAGGACTCCTCATAAAATTGGGGTTGCAAGATGAAGTTTTGAAGAAAATTCCATTTGTCAGCAAGATTCAAGAATCCAGCCAGGGTCTTCTTAAGTATGACACACCTAAGATTATTTCCAAGGACAAATTTGCCTGGCTGCGAGATGACGAATTTGCCCGCCAAGCAATAGCAGGAGTTAATCCTGTTAATATTGAAAGCCTTAAAGTTTTCCCACCTGTAAGCCAGCTAGACCCTGAAATTTATGGTCCACAAGAGTCTGCTCTTAAGGAAGAACACATTTTGAGTCAACTCAATGGCATGACTGTTCAACAGGCAATCGAGGAAAATAAGCTTTTTATCATAGATTATCATGATATCTACCTTCCTTTCCTTGAAGGGATCAATGCTCTTGATGGTAGAAAATCGTATGCTACACGTACCATCTTTTTCTTGACACCCCTTGGTACTCTCAAGCCTGTGGCCATAGAACTTAGCCTGCCTCCTGCTGGTCCTTGTTCGCGATTGAAACGCGTGGTTACACCTCCAATTGATGCAACTACTAATTGGGTATGGCAACTTGCCAAGGCCCATGTTTGCTCCAATGATGCTGGGGTGCACCAACTTGTTAACCATTGGTTACGCACACATGCTTGCGTGGAACCATTTATATTGGCGGCTCATAGGCAATTGAGTGCTATGCATCCAATTTTCAAGTTATTGGACCCACACATGAGGTACACTTTGGAGATCAATGCCTTAGCTCGCCAAAGCTTGATCCATGCTGATGGAATCATTGAAAGTTGTTTCACTCCTGGTCGCTATGCCATGGAGCTTAGTTCTGCTGCTTACAAAAATTTTTGGCGCTTTGACATGGATAGCCTCCCTGCAGATCTCATCCGCAGGGGAATGGCAGTACCTGACCCAACACAGCCACATGGTCTAAAGCTAGTATTGGAAGATTACCCTTATGCAGCTGATGGGATACTAATTTGGTCTGCAATAGAAGATTGGGTTCGCACCTATGTGAACCATTACTATCCACATTCAAGCCTTATATGCAATGACAAAGAGCTACAATCTTGGTACTCTGAGTCAATCAATGTGGGTCATGCTGATCTTAGGCATGAAAGTTGGTGGCCCACGTTGAGCAATAGTGAAGATCTTGTCTCCATCCTTTCCATAATAATTTGGAATGCATCTGCACAACATGCTGCTCTTAATTTTGGGCAGTATCCTTATGGTGGCTACGTGCCAAATCGTCCACCGTTGATGCGAAGATTAATACCCGAAGAGAGTGATCCAGAGTATGCAAGTTTCCTTGCTGACCCACAAAAGTATTTTCTTAATGCATTACCTAGCTTGTTGCAAGCTACAAAATTTATGGCTGTGGTTGACACACTCTCCACTCACTCACCTGATGAGGAGTACTTGGGAGAGAGGCAACAACCTTCCATTTGGTCTGGTGATGCTGAGATCATTGAGGCATTCTATGATTTCTCTGCAAAGATTAGGCAGATAGAGAAGGTGATTGATAGCAGGAACCTTGATAGGACTCTAAGGAACCGTTGTGGTGCTGGTGTGTTGCCTTATGAGTTACTTGCTCCTAGCTCTGAACCTGGTGTTACTTGCAGAGGAGTACCCAATAGTGTGTCCACATAA 2784 0.4318 MALTKPIMGCSSLVERSLFVPSSPPSLTRHAFQLKQTRFSVPFENTRVGRLRRPSKFPVAAISEDLMKGSSSSSSSSSSSSSSSVSVEKPVKFKVRAVITVRNKIKEDLKETIVKHIDALTDRIGRNVVLELVSTEIDPKTKAAKKSNEAVLKDWSKKSNVKAERVNYTAEFIVDSNFGEPGAITVTNKHQKEFFLESITIEGFASGPVHFPCNSWVQARKDHPGKRIFFSNKPCLPGDTPAGLRLLREKELRNLRGDGKGVRNLSDRIYDYDIYNDLGNPDKGVELARPNLGGSEMYPYPRRCRTGREPSDTDMYAESRVEKPQPMYVPRDERFEESKQNTFSVKRLKAVLHNLIPGLKASLSANNQDFNEFSDVDGLYSEGLLIKLGLQDEVLKKIPFVSKIQESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGVNPVNIESLKVFPPVSQLDPEIYGPQESALKEEHILSQLNGMTVQQAIEENKLFIIDYHDIYLPFLEGINALDGRKSYATRTIFFLTPLGTLKPVAIELSLPPAGPCSRLKRVVTPPIDATTNWVWQLAKAHVCSNDAGVHQLVNHWLRTHACVEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLIHADGIIESCFTPGRYAMELSSAAYKNFWRFDMDSLPADLIRRGMAVPDPTQPHGLKLVLEDYPYAADGILIWSAIEDWVRTYVNHYYPHSSLICNDKELQSWYSESINVGHADLRHESWWPTLSNSEDLVSILSIIIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEESDPEYASFLADPQKYFLNALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIIEAFYDFSAKIRQIEKVIDSRNLDRTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1074 927 SMART LH2_4 93 232 IPR001024 GO:0005515
Apr10g1074 927 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 33 926 - -
Apr10g1074 927 PRINTS Lipoxygenase signature 563 580 IPR013819 GO:0016702|GO:0046872
Apr10g1074 927 PRINTS Lipoxygenase signature 581 598 IPR013819 GO:0016702|GO:0046872
Apr10g1074 927 PRINTS Lipoxygenase signature 601 621 IPR013819 GO:0016702|GO:0046872
Apr10g1074 927 Gene3D - 236 338 - -
Apr10g1074 927 PRINTS Plant lipoxygenase signature 201 219 IPR001246 GO:0016491
Apr10g1074 927 PRINTS Plant lipoxygenase signature 227 248 IPR001246 GO:0016491
Apr10g1074 927 PRINTS Plant lipoxygenase signature 266 282 IPR001246 GO:0016491
Apr10g1074 927 PRINTS Plant lipoxygenase signature 299 318 IPR001246 GO:0016491
Apr10g1074 927 PRINTS Plant lipoxygenase signature 367 388 IPR001246 GO:0016491
Apr10g1074 927 PRINTS Plant lipoxygenase signature 412 428 IPR001246 GO:0016491
Apr10g1074 927 PRINTS Plant lipoxygenase signature 451 470 IPR001246 GO:0016491
Apr10g1074 927 PRINTS Plant lipoxygenase signature 518 542 IPR001246 GO:0016491
Apr10g1074 927 PRINTS Plant lipoxygenase signature 839 853 IPR001246 GO:0016491
Apr10g1074 927 Gene3D - 560 926 - -
Apr10g1074 927 Pfam PLAT/LH2 domain 145 230 IPR001024 GO:0005515
Apr10g1074 927 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 234 927 IPR013819 GO:0016702|GO:0046872
Apr10g1074 927 CDD PLAT_LH2 93 232 IPR042057 -
Apr10g1074 927 Pfam Lipoxygenase 244 910 IPR013819 GO:0016702|GO:0046872
Apr10g1074 927 Gene3D PLAT/LH2 domain 80 234 - -
Apr10g1074 927 PANTHER LIPOXYGENASE 33 926 IPR000907 GO:0016702|GO:0046872
Apr10g1074 927 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 93 234 IPR036392 GO:0005515
Apr10g1074 927 Gene3D - 425 557 - -
Apr10g1074 927 ProSitePatterns Lipoxygenases iron-binding region signature 1. 581 595 IPR020833 GO:0016702|GO:0046872
Apr10g1074 927 ProSiteProfiles PLAT domain profile. 109 231 IPR001024 GO:0005515
Apr10g1074 927 ProSitePatterns Lipoxygenases iron-binding region signature 2. 608 618 IPR020834 GO:0016702|GO:0046872
Apr10g1074 927 SUPERFAMILY Lipoxigenase 237 926 IPR036226 -
Apr10g1074 927 Gene3D - 339 424 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1074 Apr-Chr10 23116706 23122504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1074 1 926 Acyl Lipid Metabolism Gene Families AT1G17420 72.288 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1074 K00454 - gmx:100793614 1701.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1074 10 23116706 23122504 Apr10g1074 10 23116706 23122504 ECH