Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1071 ATGGCGGTTTCTACTATAGCTTTATACGCGAGTCCACCGAGCAGTGTGTGTTCCACGCCGTACCCTTGCCAGATAAATGCTCACGCTTCCTACGACTTCGAATTGGGGTCCCGATCTTCGTCGTCGGCGACCGCAACGACAACGTCGACGTCGCAGAAGCCGGTGATGGGTGGTCTTTCGTGCCTATTTTCCTCTCCGGCGCCGGCGGTGAAGCACGCTCCGTTGTCGTCGAGTTTTTCCGGCGCCGGCGAGGAAGACGAGTTGAAGGAACTGAGTAGTTCCTTTTCGTACTCGCCGAGCAAGTTCGGTGGGTCTTCATGGAAGAGGGATCAGAGTCCCGTGTCGGTGTTTCATGGTCCTGTTTCGTGTAGCAGCACGAGGAGTTCAACACCTGTGAGGATCAGGTGTGAAAGGGGCGGCACGTGTGGGTTGTTTGACGGGTTTGTGAGGAATGCGTTGGGGTCTTCTTGTTTGGATTATGATTCTCCAAGTTTCAGTGTTCGTGGGGGTGATTTAGACGCTGGTGATTCTTCTGCTTTGGTTGATGAGTTGACTTTCAATTTGGAGGATGCTTTTGTGGAGGGTGGATTTGAGCCCTATGCTAAGAAGTTGCTTTTGGGGGCTCAGTTGAGGCACAAGATCTTCTGTGAAGAGTTTGTTATTAAGGCCTTTTGTGAAGCTGAGAAAGCACATAGAGGGCAGGTTTCTAAGCTGAGTCACTTAAGCAAGCTGGCCCGAGAAAACAATACAGCTAGCAAGTCAGTTGAAGCAGACCGCTTGCATACCATGTTCCTTGCCATGACAGATGCAAGAGCCGTCCTCATTAAACTTGCGGATCGGCTACATAATATGATGACACTAGAAGCATTGCCAGTGGCCAAGCAACAGAGGTTTGCAAAGGAGACTCTGGAGATATTTGCACCTTTGGCCAATCGCTTAGGAATTTCTAGTTGGAAGGAACAATTAGAGAATTTGTGTTTTAAGCATCTCAACCCAGGCCAGCATGAGGAGCTTTCATCAAAGCTTGTGGAATCGTATGATGATGCAATGATTACTTCTGCAATAGAGAGATTGGAGCAAGCACTTAAAGATGAAGGCATATCTTATCATGTCATTTCTGGTCGGCATAAAAGCTTGTATAGCATATATTGCAAGATGTTAAAGAAGAAACTAACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGATGACGAAGAAGACTGTTATAAAGCCTTAACAGTTGTTCATCGGTTGTGGTCTGAGGTACCTGGAAAGCTGAAAGATTACATATGTCGACCCAAGTTCAATGGTTATCAATCTCTGCATACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGAACAAAGGATATGCATTTACAAGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGATGATTGTCAGCATTCATCATTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAAACAATGAGTAGAGATTGTTCATCTGTTGGATATGCTGATTCAGTCAAGCCCCCATGCAAGTTCCCTTCCCATGCCGATGATTGCCCATATTCTTATAAGCCTGATTGTGGTCACGATGGGCCCGTCTTTGTCATCATGATTGAGAATGATAAGATGTCTGTCCAAGAATTTAGTGCAAACTCAACAGTCATGGATTTGATGGAAAGGGCTGGAAGAGCAAGCTGTAGGTTGACAACATATAGGTTCCCTCTGAAGGAAGAGTTGAGGCCAAGGCTGAATCATAAGCCTGTAAGTGATCCTAATTGCAAGTTGAAGATGGGTGATGTGGTTGAACTCACACCAGCCATACCTGACAAGTCTCTCACAGAATATAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACCGTGTCAAGCACAGGAAATGCTGCAAGCACCATGGTTGGCTCAAGAAGTTGA 1983 0.4639 MAVSTIALYASPPSSVCSTPYPCQINAHASYDFELGSRSSSSATATTTSTSQKPVMGGLSCLFSSPAPAVKHAPLSSSFSGAGEEDELKELSSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSSTRSSTPVRIRCERGGTCGLFDGFVRNALGSSCLDYDSPSFSVRGGDLDAGDSSALVDELTFNLEDAFVEGGFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQVSKLSHLSKLARENNTASKSVEADRLHTMFLAMTDARAVLIKLADRLHNMMTLEALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPGQHEELSSKLVESYDDAMITSAIERLEQALKDEGISYHVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVDDEEDCYKALTVVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCETMSRDCSSVGYADSVKPPCKFPSHADDCPYSYKPDCGHDGPVFVIMIENDKMSVQEFSANSTVMDLMERAGRASCRLTTYRFPLKEELRPRLNHKPVSDPNCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLTVSSTGNAASTMVGSRS* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1071 660 Gene3D Beta Polymerase, domain 2 335 464 IPR043519 -
Apr10g1071 660 CDD NT_Rel-Spo_like 354 472 IPR007685 GO:0015969
Apr10g1071 660 PANTHER - 1 235 - -
Apr10g1071 660 PANTHER - 235 660 - -
Apr10g1071 660 ProSiteProfiles S4 RNA-binding domain profile. 598 634 - -
Apr10g1071 660 SMART RelA_SpoT_2 374 484 IPR007685 GO:0015969
Apr10g1071 660 SUPERFAMILY Nucleotidyltransferase 321 511 IPR043519 -
Apr10g1071 660 Gene3D Hypothetical protein af1432 229 331 - -
Apr10g1071 660 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 235 660 - -
Apr10g1071 660 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 235 - -
Apr10g1071 660 Pfam Region found in RelA / SpoT proteins 374 483 IPR007685 GO:0015969
Apr10g1071 660 Pfam HD domain 235 315 - -
Apr10g1071 660 SUPERFAMILY HD-domain/PDEase-like 203 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1071 Apr-Chr10 23070446 23075931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1071 257 481 EF-hand Containing Proteins AT3G17470 35.772 6.35e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1071 K00951 - gmx:100787301 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1071 10 23070446 23075931 Apr10g1071 10 23070446 23075931 ECH