Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1066 ATGGTGCTCATTATCTTCCTTTTCGCTCTTATTTCATCCACAACTTCCCGTGCTTCTAATGCCAACGATTTTTGTGTGGCAAATCTGACGGGCCCAGAAACCCCTTCAGGGTATCTATGCAAATCAACAAACACAGTAACATCAAGTGACTTTAAGTACAGTGGCCTTACCCCTGGAAACCCCTCCTCAACCTACAATATTGCATTAACCACTGCATTTGTTGATCAATTTCCAGCTGTGAACGGTCTTTATATCTCTATGGCACGTGTAGACATGGGTGTTGGAGGAGTTGTTCCCGTGCACACGCATCCAGGTGGCAATGAAATGATACTCGTATTGCAAGGTAAAATTATAGCTGGATTCATAACATCTACCAATGTTTATATGAACATTCTCGGACCCGGTGATGTTATGGTTTTCCCACAAGGACAATTGCATTTTCAAATAAATAATGGTACGACGAAAGCCGTTGTTATTAGCGCTTATAGTAGCCCAAGGCCACGCATCAATATAGTTCTTAATCTACTATTTGCCAACTTACCCGCCGACATAATTGCAGCAATCACCAAAATTAGTCCTCCCGAAGTGCAGAAGCTTAAGGCTCAATTCGGTGGCAGCGGCTAG 624 0.4311 MVLIIFLFALISSTTSRASNANDFCVANLTGPETPSGYLCKSTNTVTSSDFKYSGLTPGNPSSTYNIALTTAFVDQFPAVNGLYISMARVDMGVGGVVPVHTHPGGNEMILVLQGKIIAGFITSTNVYMNILGPGDVMVFPQGQLHFQINNGTTKAVVISAYSSPRPRINIVLNLLFANLPADIIAAITKISPPEVQKLKAQFGGSG* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1066 207 CDD cupin_OxOx 18 203 - -
Apr10g1066 207 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Apr10g1066 207 Pfam Cupin 57 196 IPR006045 -
Apr10g1066 207 Gene3D Jelly Rolls 17 207 IPR014710 -
Apr10g1066 207 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 203 - -
Apr10g1066 207 SUPERFAMILY RmlC-like cupins 21 203 IPR011051 -
Apr10g1066 207 SMART Cupin_1_3 54 197 IPR006045 -
Apr10g1066 207 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Apr10g1066 207 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Apr10g1066 207 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Apr10g1066 207 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 7 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1066 Apr-Chr10 23041914 23042537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1066 1 206 Miscellaneous Gene Families AT5G20630 48.815 7.74e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1066 - - aprc:113851042 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1066 10 23041914 23042537 Apr10g1066 10 23041914 23042537 ECH