Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1065 ATGAAGATGATTTTCATTCTCTTCCTCTATGCTCTTCTTTCATTCACTTCCCAAGCTTCTGTGAATGATTTCTGTGTAGCAGACCTGAAGGGTCCAGATAGCCCTTCAGGGTATCAATGCAAGCCACCAAATACAGTAACAGTGAATGACTTTGTGTTCTCTGGCTTTGTAGCTGGAGACACCAATAACTCATTCAATGCTGCATTAACCTCAGCATTTGTCACTGATTTTCCAGGTGTGAATGGACTTGGCATATCTGCAGCAAGATTAGACATAGCCAAAGGTGGATCAATCCCAATGCACACTCACCCTGGTGCCACTGAACTCTTAGTAATGGTGAAAGGTCAAATCACTGCAGGGTTCATGACTCCAACTGCACTTTATCAGAAGACACTGAAACCTGGTGATATCATGGTTTTCCCACAAGGACAGTTACACTTTCAGGTGAATTCTGGTGTGGGAAAAGCCACTGCTTTTCTTGCTTTCAGTAGTGCAAACCCTGGAGCACAGTTACTTGATCTTTTGTTGTTTGGTAACTCTTTACCGTCTGAATTAGTTGCACAAACTACGCACCTTGATGTTGCACAAGTGAATAAGCTCAAGGCTCGATTTGGGGGAAGAGGTGCATAG 630 0.4349 MKMIFILFLYALLSFTSQASVNDFCVADLKGPDSPSGYQCKPPNTVTVNDFVFSGFVAGDTNNSFNAALTSAFVTDFPGVNGLGISAARLDIAKGGSIPMHTHPGATELLVMVKGQITAGFMTPTALYQKTLKPGDIMVFPQGQLHFQVNSGVGKATAFLAFSSANPGAQLLDLLLFGNSLPSELVAQTTHLDVAQVNKLKARFGGRGA* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1065 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Apr10g1065 209 CDD cupin_OxOx 17 204 - -
Apr10g1065 209 Pfam Cupin 58 197 IPR006045 -
Apr10g1065 209 Gene3D Jelly Rolls 17 207 IPR014710 -
Apr10g1065 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Apr10g1065 209 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Apr10g1065 209 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Apr10g1065 209 SMART Cupin_1_3 54 198 IPR006045 -
Apr10g1065 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 6 204 - -
Apr10g1065 209 PANTHER GERMIN-LIKE PROTEIN 6 204 - -
Apr10g1065 209 SUPERFAMILY RmlC-like cupins 22 205 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1065 Apr-Chr10 23039900 23040529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1065 1 206 Miscellaneous Gene Families AT5G20630 58.852 1.78e-78 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1065 - - gmx:100783206 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1065 10 23039900 23040529 Apr10g1065 10 23039900 23040529 ECH