Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1047 ATGAGTTTGCAACAAATTGGGCAGCCTAAATCATCTAATGGATATGGTCGATGGAAATCTGAAAAAGAAAGGGCAACTAAGTCTGATAATAAGTTCTCTGGAAAATCAAATGCTTGCAGCAGATTAGCAAGTACAGGTGTAATGACTGGCAATAAAGGTGGAAGTTATGAGAGTACTTCACGTGATCGACTAGTATATTTAACGACATGTCTTATTGGGCAACAAGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGACAAAGATTTTGGAATCATTTTGAAAATGGCTTGCTTGACAAAGGATGGTTCTTTCCAAGGGCAGAGGTCTGGTGTAGAATTTGTCAGCAAAGCTCCATCTAAGACTTTAATTATACCTGCCAATGACCTTGTACAAGTCATAGCGAAGAATGTTGCTGTTTCCAGAGATGGCCTATCTAGTGAATCTCATCATGATATGCATGAGGAGATCATGGTTGATTCAGTAATATCTCAATCTCGTCATGTGGAGCTAGGTAGAGAATTACAAAGATGGGTACCTGATGAAGACGATCCACAATGCCCTGAAATGGAAAGTACCTTTGATGGCCCTTGGAAAAGGGATTGGGATCAATTTGAAACAAATGAAATGTTGTTTGGTGTGAAAAGCACATTCAACGAGGAACTCTATACAACAAAGCTCGAAAAGGGGCCTCAGATGAGAGAATTGGAAAAGGAAGCATTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTAGCAGAGGAAAGAGGGATTTACCATAACTTTAATATTGATGAAGAGACCAGATTCTCTTCAGTATATAGGGGTAAAGGTGTTGATGATAGTGGATATGATGAAAATGAGGACAAATTGTCAGATTCACAAAATTCTGAAACATTTGGTGACATGTATGGTTCAAGCATTAAGAAACCAGGTGAAATAAGTGGTCGAAGAGGCAATACTGGAGCTCAAACATGGTCAAATTTCACCTCTGTGGATCACTCACAGTCATCTCAGTCAAGTACCGGTGTGGCTTTGTGTCGCTCTGGATCTAATGATCATGCTAAGCAGTTAGCACCTGAACCCCCTGCCCAAAGTTGCTTAGTTTCAGATGGGGAAAGAAGGATTCAGGAGAACTCGGTTAGCGATCTGGATGGAGCCCATGATAATGCCGTGGAAGAAAATTGGACACAAGCTGAGGATGCCCAGCTATCAAAATCTGAGGATTTACAGTCATCACTCAACATAAAGAAAGATGGTTCCAGTGAAAAGGGGTTATCTCCTGATGCAGCCTCTGGTACCCCTTCTACTAATATTTTATCGAAGACTCATGAGGGAACTGTTGGGGAGTTGACTGGGGGTTCTGCATCTGTTAAAGCTAACAAGGAAACAAAGTCTGTAAATTCACGCGGAAGACTAGGTAGTACACAATCTGGTTTGGATTGTGTTGTAGCATCTTCTGGTCCTGGTCTGTCTCCAAGCTCTTCAGTTGGTTCAATGTCTTCGGAAAAGTCAACTCTGAATCCCAATGCCAAGGAATTCAAGCTAAACCCCAATGCTAAGAGTTTTATTCCATCTCAAACACATGCTAGGCCTCGCTCCCCAGTTTCTGATGGTTCCTACTATTACCCACCTAATGTAACCACTGTACCAAATATGCCAGCCATGCCCATGGGTATTGGAGTTGGAACTACTTTTGCTGGTCCACAACCTGTCATATATAATCCGCAGGTAGCACAAATACCATCGCAACCATATTTTCATCCAAATGGACCGCAGTATGGACAACTTCCTGGTCATCCTAGGCAAGTTTTATACATGCCAAGTTACCTACCGGAGACGCCGTATAGGGGACGGGATTATTGA 1908 0.4182 MSLQQIGQPKSSNGYGRWKSEKERATKSDNKFSGKSNACSRLASTGVMTGNKGGSYESTSRDRLVYLTTCLIGQQVEVQVKNGSIYSGIFHATNTDKDFGIILKMACLTKDGSFQGQRSGVEFVSKAPSKTLIIPANDLVQVIAKNVAVSRDGLSSESHHDMHEEIMVDSVISQSRHVELGRELQRWVPDEDDPQCPEMESTFDGPWKRDWDQFETNEMLFGVKSTFNEELYTTKLEKGPQMRELEKEALRIAREIEGEETQDLHLAEERGIYHNFNIDEETRFSSVYRGKGVDDSGYDENEDKLSDSQNSETFGDMYGSSIKKPGEISGRRGNTGAQTWSNFTSVDHSQSSQSSTGVALCRSGSNDHAKQLAPEPPAQSCLVSDGERRIQENSVSDLDGAHDNAVEENWTQAEDAQLSKSEDLQSSLNIKKDGSSEKGLSPDAASGTPSTNILSKTHEGTVGELTGGSASVKANKETKSVNSRGRLGSTQSGLDCVVASSGPGLSPSSSVGSMSSEKSTLNPNAKEFKLNPNAKSFIPSQTHARPRSPVSDGSYYYPPNVTTVPNMPAMPMGIGVGTTFAGPQPVIYNPQVAQIPSQPYFHPNGPQYGQLPGHPRQVLYMPSYLPETPYRGRDY* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1047 635 Coils Coil 242 262 - -
Apr10g1047 635 MobiDBLite consensus disorder prediction 1 35 - -
Apr10g1047 635 MobiDBLite consensus disorder prediction 289 381 - -
Apr10g1047 635 MobiDBLite consensus disorder prediction 441 464 - -
Apr10g1047 635 MobiDBLite consensus disorder prediction 332 362 - -
Apr10g1047 635 PANTHER ATAXIN 2-RELATED 4 626 IPR045117 GO:0003723
Apr10g1047 635 MobiDBLite consensus disorder prediction 1 15 - -
Apr10g1047 635 Pfam LsmAD domain 221 289 IPR009604 -
Apr10g1047 635 MobiDBLite consensus disorder prediction 410 434 - -
Apr10g1047 635 MobiDBLite consensus disorder prediction 289 309 - -
Apr10g1047 635 MobiDBLite consensus disorder prediction 395 550 - -
Apr10g1047 635 MobiDBLite consensus disorder prediction 16 30 - -
Apr10g1047 635 Gene3D - 68 126 - -
Apr10g1047 635 SMART LsmAD_2 221 290 IPR009604 -
Apr10g1047 635 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
Apr10g1047 635 MobiDBLite consensus disorder prediction 471 548 - -
Apr10g1047 635 Pfam Ataxin-2 C-terminal region 517 528 IPR009818 -
Apr10g1047 635 PANTHER ATAXIN-2 HOMOLOG 4 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1047 Apr-Chr10 22841599 22852632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1047 - - gmx:100796073 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1047 10 22841599 22852632 Apr10g1047 10 22841599 22852632 ECH