Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g1033 | ATGGCATACGCATCTCATTTACTCAATCACTCTTCAAAGATGAAAAATGCTCCCAAGTTGCTGCATCCTGATCGTGCCCTTCTCGTTCGTTGGTTTTCCGGCGATGCCCAATCCTCTCTCAATGGAAATCGCGATACGTGGAAAACTCGATTTCATGGGTCTTCGAGAAGAACCAATGTCTGTGAACCGTGCTTCAACTTTACTAAGAGAAACATCTCCATGACTACCATGAAAAGGGGTTCCATCGTTGGATCTATGTTCAATGGAGAGATTTCAAGAAGTTCACAGGTGCTGTCAAGCAGGTGTTATGCATCAGCTTCAGATCTCCCGCCACACCAGGAAATTGGAATGCCTTCGCTCTCACCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCCACTGTTGAGATGGAATGCATGGAGGAAGGTTATTTGGCCAAGATAATCCGGGGGGATGGGGCAAAAGAAATTAAAGTTGGTGAGGTAATTGCCGTTACTGTTGAAGATGAGGAGGACATAGCTAAGTTTAAAGACTTCCAACCTTCAGCAACAGAACCGAGTGCTTCCCCTGCCAAAGAAACATCTGCCCCACCTCCACCAAAGAAAGAGGTGGTAGAGGAGCCAGCTAGAGAACCTGAGCCAAAGGTTTCCAAATCTAGTGCACCAGCTTCATCTGGAGATCGCATATTTGCTAGTCCTCTAGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCTCTCTCTAGCATCAAAGGAACAGGACATGAAGGGCTCATTGTCAAGGTTGACATTGATGATTTCTTGGCTTCTGGTGTTAAAGAAGGTTCAGCACCCTCGAAGGCCAAGGTTGCAACAGATGCAGCATTGGATTATGCTGACATTCCTGTCTCTCAGATAAGAAAGATCACGGCTTCGCGGCTATTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCATGAGTTTGCGGACCAAACTCAATTCATTGCAAGAAGCCTCTGGTGGGCCCCGCATATCAGTTAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTTCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAGTATCATAATGTGAATATTAATGTTGCAGTGCAGACTGATCACGGACTATTTGTTCCAGTCGTCAGGGATGCAGACAAGAAAGGCCTCTCTAAAATAGGCGAAGAGGTCAAACAGTTGGCAAAGAAAGCCAAGGAGAACAGCTTGAAACCACAAGATTATGAGGGAGGTACATTTACAGTGTCTAACTTGGGAGGGCCATTTGGTGTCAAACAGTTCTGTGCCATCATCAATCCTCCTCAATCAGGCATTCTTGCAGTTGGATCTGCTGAGAAGAGGGTCATTCCAGGTTCGGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGGTGCTATTGGTGCCGAATGGTTGAAAGCATTTAAAGGCTATATTGAAAATCCAGAATCCATGTTGTTGTAA | 1626 | 0.4416 | MAYASHLLNHSSKMKNAPKLLHPDRALLVRWFSGDAQSSLNGNRDTWKTRFHGSSRRTNVCEPCFNFTKRNISMTTMKRGSIVGSMFNGEISRSSQVLSSRCYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKISPGEVLCEVETDKATVEMECMEEGYLAKIIRGDGAKEIKVGEVIAVTVEDEEDIAKFKDFQPSATEPSASPAKETSAPPPPKKEVVEEPAREPEPKVSKSSAPASSGDRIFASPLARKLAEEKNVPLSSIKGTGHEGLIVKVDIDDFLASGVKEGSAPSKAKVATDAALDYADIPVSQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTKLNSLQEASGGPRISVNDLVIKAAALALRKVPQCNSSWANDYIRQYHNVNINVAVQTDHGLFVPVVRDADKKGLSKIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQSGILAVGSAEKRVIPGSGAEEFKFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL* | 542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g1033 | 541 | SUPERFAMILY | Single hybrid motif | 111 | 206 | IPR011053 | - | |
| Apr10g1033 | 541 | CDD | lipoyl_domain | 113 | 186 | - | - | |
| Apr10g1033 | 541 | Gene3D | - | 239 | 292 | IPR036625 | GO:0016746 | |
| Apr10g1033 | 541 | Pfam | Biotin-requiring enzyme | 114 | 186 | IPR000089 | - | |
| Apr10g1033 | 541 | SUPERFAMILY | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 243 | 289 | IPR036625 | GO:0016746 | |
| Apr10g1033 | 541 | MobiDBLite | consensus disorder prediction | 199 | 248 | - | - | |
| Apr10g1033 | 541 | PANTHER | DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL | 58 | 541 | - | - | |
| Apr10g1033 | 541 | Gene3D | - | 295 | 539 | IPR023213 | - | |
| Apr10g1033 | 541 | PANTHER | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX | 58 | 541 | - | - | |
| Apr10g1033 | 541 | TIGRFAM | PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase | 114 | 541 | IPR006257 | GO:0004742|GO:0006090|GO:0045254 | |
| Apr10g1033 | 541 | MobiDBLite | consensus disorder prediction | 220 | 235 | - | - | |
| Apr10g1033 | 541 | SUPERFAMILY | CoA-dependent acyltransferases | 310 | 541 | - | - | |
| Apr10g1033 | 541 | ProSitePatterns | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 137 | 166 | IPR003016 | - | |
| Apr10g1033 | 541 | ProSiteProfiles | Biotinyl/lipoyl domain profile. | 112 | 188 | IPR000089 | - | |
| Apr10g1033 | 541 | Gene3D | - | 107 | 212 | - | - | |
| Apr10g1033 | 541 | Pfam | e3 binding domain | 250 | 284 | IPR004167 | GO:0016746 | |
| Apr10g1033 | 541 | Pfam | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | 311 | 541 | IPR001078 | GO:0016746 | |
| Apr10g1033 | 541 | ProSiteProfiles | Peripheral subunit-binding (PSBD) domain profile. | 251 | 288 | IPR004167 | GO:0016746 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr10g1033 | Apr-Chr10 | 22734415 | 22740936 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr10g1033 | 1 | 541 | Acyl Lipid Metabolism Gene Families | AT1G54220 | 67.455 | 0.0 | 746 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g1033 | K00627 | - | gmx:100778218 | 919.842 |