Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1031 ATGCTTCCAGTCTTTGGCAATAAGAGCCAGAAAATAAAGGGCACAGTGGTGTTGTTGCCCAAAAGTGCTCTTGACTTCAACGCCGTCACTTCAATTGGTAGTGGCGGTGTTGGTGACGCTGCTGACAATGCTACTGCTTTCATAGGAAACAGCGTTTCCATGAAGTTGATCAGTGCTACCAAAGCAGATTCAAATGGAAATGGGATAGTTGGAAAAGAAGCGTATTTGGAGAAACACCTTCCGACGTCGCCAAAGTTGGGAGCAAGACAGGAATACAGTGTTTATTTTGAATGGCATGCTGATTTTGGAATTCCAGGAGCATTTTACATTAAGAATTATATGACCGATGAGTTCTTCCTCGTCAGTGTCACTCTTGACGACATTCCAAACCATGAAACCATTCAATTTGTTTGTAAATCATGGATTTACAACTATAATTATTACAACAAGGATCGCATCTTCTTCGACAATAACACATATCTTCCAAGTGAAACACCATCTCCTTTAGTTAAGTACAAGGAAGAAGAGTTGCAAAATTTAAGAGGAGATGGGACTGGAAAGCGCAAGGAATATGAAAGGATCTATGATTATGCTCTGTATAACGATTTGGGCGATCCAGATAATGGTAATGCTCGCCCAATCCTTGGAGGGTCTAGCACTCATCCTTACCCTCGCAGGGTTAGAACCGGTAGAGAACCCACAAAGACAGATCCTAACAGTGAGCAACGTGGCGAGATTTATGTTCCAAGAGATGAAAATTTGGGTCACTTCAACCCATCAGATTTTCTCACCTATGGAATAAAATCTTTATCAGAGGACATCCTACCTATGATCCAATCTGTGAATTTTGACTTAGACTCATCCAATGAGTTTCGTAGCTTCGATGAAGTGTATCAACTCTATGAAGATGGAATTAAGCTGTCAACAAATAGAATTAGCCAAATTAGCTCATTACCAGTCCTCAGCGAAATCTTCAGCACTGATGGTGAAAATGCCAAATTTCCACTACCCCATGTAATCAGAGTTAGCAAGTCTGCTTGGATGACTGATGATGAATTTGCGAGGGAGATGGTTGCTGGCTTAAATCCTTGTGTAATTCGCCGTCTTCAAGAGTTCCCCCCACGAAGCACTCTAGATCCCACACTCTACGGTGATCAAACTAGCACAATAACAAAAGAACAGTTGGAGATTAATATGGGTGGGGTCACGGTGGATCAGGCAATTGGTAGTTTGAGATTATTCATATTAGATTACCAAGATGCATTCATGCCATTTTTGACGGACATCAACAAACTACCTTCTACAAAGGCTTATGCCACAAGGACAATCTTCTTCTTGAAAGAGGATGGGACTTTGAAACCACTTGCTATCGAATTAAGTAAGCCACATCCAAATGGAGTTCAATTTGGTGCTGAGAGTATAGTGGTGTTGCCTGCTAACGAGGGTGATAAAAGAACAATTTGGCTATTAGCTAAGGCTCATGTTATTGTAAATGACTCTGGCTATCATCAGCTCATGAGCCATTGGTTAAAGACTCATGCAGTGATGGAGCCATTTGTCATAGCAACACATAGGAATCTCAGTGTACTTCACCCTATTTATAAGCTTCTATTTCCTCACTGTCGAGGCACCATAAGTATCAATGCCCGCGCTAGGGCATCACTGATTAATGCAGGTGGCGTTATAGAAGCAACATTTTTTTCTGGACCGACCTCTATGGAGATGTCTTCGGCTGTTTACAAGGATTGGGTTTTCACTGACCAAGCATTACCAGCTGATCTTATCAAGAGAGGATTGGCAGTTGAGGATCCCACTGCCCCACATGGCCTTCGTCTTTTAATTGAAGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGACATGGGTCAAAGAATATGTCTCCTTGTATTACCCTTCAGATGTAGCAGTTCAACAGGATACGGAGCTGCAAGCTTGGTGGAAAGAAGCTGTAGAAAAGGGTCATGCAGACTTGAAAGATAAGCCATGGTGGCCTAGGATGCAAACTCTTGAAGACCTTATTCGTTCCTGTTCTATAATTATATGGACTGGTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAATATCCATATGGAGGGTTAATCTTGAACCGTCCAACTATGAGCAGAAGATTTATCCCAGAACCAGGAACTGAAGAATATGATGAGACGGTGAAGTGTTATGAAACGGCTTATCTGAGAACAATCACACCAAAGGACAAAACCATTATTGAGATGACAATGATAGAGATGTTGTCAGCGCATGCTTCTGATGAGGTATTCCTTGGGTGTACTAACACAGTTATTTGGAAATCTGGTTCAAAGGCGATCCAAGTCTTTGAAAACTTTGGAACTAAACTGACAGAAATAGAGGGAAAAATCACAGGAAGGAACAATGATCCAAGTTTGAGAAATCGTTTTGGACCAATTCAGTTGCCTTACACATTGCTCTTTCGTTCTAGCGAGCCAGGAATTACTTTCCAAGGAATTCCCAACAGTATCTCTATCTAA 2544 0.4155 MLPVFGNKSQKIKGTVVLLPKSALDFNAVTSIGSGGVGDAADNATAFIGNSVSMKLISATKADSNGNGIVGKEAYLEKHLPTSPKLGARQEYSVYFEWHADFGIPGAFYIKNYMTDEFFLVSVTLDDIPNHETIQFVCKSWIYNYNYYNKDRIFFDNNTYLPSETPSPLVKYKEEELQNLRGDGTGKRKEYERIYDYALYNDLGDPDNGNARPILGGSSTHPYPRRVRTGREPTKTDPNSEQRGEIYVPRDENLGHFNPSDFLTYGIKSLSEDILPMIQSVNFDLDSSNEFRSFDEVYQLYEDGIKLSTNRISQISSLPVLSEIFSTDGENAKFPLPHVIRVSKSAWMTDDEFAREMVAGLNPCVIRRLQEFPPRSTLDPTLYGDQTSTITKEQLEINMGGVTVDQAIGSLRLFILDYQDAFMPFLTDINKLPSTKAYATRTIFFLKEDGTLKPLAIELSKPHPNGVQFGAESIVVLPANEGDKRTIWLLAKAHVIVNDSGYHQLMSHWLKTHAVMEPFVIATHRNLSVLHPIYKLLFPHCRGTISINARARASLINAGGVIEATFFSGPTSMEMSSAVYKDWVFTDQALPADLIKRGLAVEDPTAPHGLRLLIEDYPYAVDGLEIWDAIKTWVKEYVSLYYPSDVAVQQDTELQAWWKEAVEKGHADLKDKPWWPRMQTLEDLIRSCSIIIWTGSALHAAVNFGQYPYGGLILNRPTMSRRFIPEPGTEEYDETVKCYETAYLRTITPKDKTIIEMTMIEMLSAHASDEVFLGCTNTVIWKSGSKAIQVFENFGTKLTEIEGKITGRNNDPSLRNRFGPIQLPYTLLFRSSEPGITFQGIPNSISI* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1031 847 SUPERFAMILY Lipoxigenase 161 847 IPR036226 -
Apr10g1031 847 Gene3D PLAT/LH2 domain 3 160 - -
Apr10g1031 847 Gene3D - 259 345 IPR027433 -
Apr10g1031 847 Gene3D - 346 480 - -
Apr10g1031 847 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 10 160 IPR036392 GO:0005515
Apr10g1031 847 MobiDBLite consensus disorder prediction 225 243 - -
Apr10g1031 847 ProSiteProfiles PLAT domain profile. 24 156 IPR001024 GO:0005515
Apr10g1031 847 Gene3D - 161 257 - -
Apr10g1031 847 PRINTS Lipoxygenase signature 485 502 IPR013819 GO:0016702|GO:0046872
Apr10g1031 847 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Apr10g1031 847 PRINTS Lipoxygenase signature 523 543 IPR013819 GO:0016702|GO:0046872
Apr10g1031 847 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 847 - -
Apr10g1031 847 ProSitePatterns Lipoxygenases iron-binding region signature 2. 530 540 IPR020834 GO:0016702|GO:0046872
Apr10g1031 847 Pfam Lipoxygenase 169 829 IPR013819 GO:0016702|GO:0046872
Apr10g1031 847 Gene3D - 482 846 - -
Apr10g1031 847 PANTHER LIPOXYGENASE 1 847 IPR000907 GO:0016702|GO:0046872
Apr10g1031 847 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 159 847 IPR013819 GO:0016702|GO:0046872
Apr10g1031 847 SMART LH2_4 10 157 IPR001024 GO:0005515
Apr10g1031 847 Pfam PLAT/LH2 domain 61 155 IPR001024 GO:0005515
Apr10g1031 847 MobiDBLite consensus disorder prediction 212 243 - -
Apr10g1031 847 PRINTS Plant lipoxygenase signature 126 144 IPR001246 GO:0016491
Apr10g1031 847 PRINTS Plant lipoxygenase signature 152 173 IPR001246 GO:0016491
Apr10g1031 847 PRINTS Plant lipoxygenase signature 191 207 IPR001246 GO:0016491
Apr10g1031 847 PRINTS Plant lipoxygenase signature 222 241 IPR001246 GO:0016491
Apr10g1031 847 PRINTS Plant lipoxygenase signature 288 309 IPR001246 GO:0016491
Apr10g1031 847 PRINTS Plant lipoxygenase signature 332 348 IPR001246 GO:0016491
Apr10g1031 847 PRINTS Plant lipoxygenase signature 371 390 IPR001246 GO:0016491
Apr10g1031 847 PRINTS Plant lipoxygenase signature 438 462 IPR001246 GO:0016491
Apr10g1031 847 PRINTS Plant lipoxygenase signature 760 774 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1031 Apr-Chr10 22710205 22714450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1031 9 847 Acyl Lipid Metabolism Gene Families AT1G55020 53.630 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1031 K15718 - gmx:547835 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1031 10 22710205 22714450 Apr10g1031 10 22710205 22714450 ECH