Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1030 ATGCTTCCAATCTTTGGCAATAAGAGCCAGAAAATAAAGGGCACAGTGGTTTTGATGCCCAAAAATGTTTTGGACTTCAACGCCGTCGTTTCAGTTGGGAGTGGCGGTGTTGGCGGTGCTATTGACGCTGCTACTTCCTTCTTAGGTCGCAGCGTCTCCATGCAGTTGATCAGTGCTACCAAAACTGATTCAAATGGAGATGGGAAAGTTGGAAGCGAAGCGTATTTGGATAAACATCTTCCAACGTTACCAACGTTGGGAGCAAGACAGGATGCATTCAGTGTTTATTTTGAATGGAATGCTGATTTTGGAATTCCAGGAGCATTTTACATTAAGAATTTTATGACCGATGAGTTCTTCCTCGTCAGTGTCACTCTTGAAGACATTCCAAACCATGGAACCATTCACTTTCTCTGTAAATCATGGATTTACAACTTTAATCGTTACCACAAAAAGGGCCGCATCTTCTTCGACAATAACACATATCTTCCAACTGCAACACCATCTCCTTTAGTAAAGTATAGAGAAGAAGAGTTAAAAAATCTAAGAGGAGATGGGACTGGAGAGCGTCAGATATATGACAGGATCTATGATTATGATGTGTATAATGATTTGGGCGATCCAGATCATGGTAATGCTCGCCCAGTCCTTGGAGGGTCTAGCACTCATCCTTACCCTCGCAGGGTTAGAACTGGTAGAAAACCCACAAAGACAGATCCTAACAGTGAGCAACTGGGCGAGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTTCTCACCTATGGAATAAAATCTTTATCTCAGGACGTCATACCTATGTTCCAATCTGCGATTTTTGACTTAAGTGTCACAAAGAGTGAGTTTGATAGCTTCGATGATGTGCATCAACTCTATGAAGGTGGAATCAAGCTGCCAACAAATATAATTAGCCAAATTAGCCCCTTACCAGTCCTCAGTGAAATCTTCCGCACTGATGGTGAAAGTGTCCTTAAATTTCCACCACCCCATGTAACCAGAGTTAGCAAGTCTGCTTGGATGACTGATGATGAATTTGCTAGGGAGATGGTTGCTGGGGTAAATCCTTGTGTAATTCGCCGTCTTCAAGAGTTTCCCCCACGAAGCACTCTAGATCCCACACTCTACGGTGATCAAACAAGCACAATAACAAAAGAACAGTTGGAGATTAATATGGGTGGGGTCACGGTGGATCAGGCAATTGGTAGCTTGAGATTATTCATATTAGATTACCAAGATGCATTCATGCCATTTTTGACCAAGATCAATAGCTTACCTTCTGCAAAGGCTTATGCCACAAGAACAATCTTGTTATTGAAAGATGATGGGACTTTGAAACCACTTGCTATCGAATTAAGTAAGCCACATCCAAATGGAGTTCAATTTGGTGCTGAGAGTAAAGTGGTGTTGCCTGCTATCGAAGGTGTTGAAAGTACAATTTGGCTATTAGCTAAGGCTCATGTTATAGTAAATGACTCTGGCTATCATCAGCTCATAAGCCATTGGTTAAATACTCATGCAGTAATGGAGCCATTTGTCATAGCAACCAATAGGAATCTCAGTGTAGTTCACCCAATTTATAAGCTTCTACTTCCTCACTATCGTGACACCATAAATATCAATGGACTCGCTAGGCAATCACTGATTAATGCAGGTGGCATTATAGAGCAATCATTTTTGCCTGGACCATACTCTATTGAGATGTCTTCAGCTGTTTACAAGAATTGGGTTTTCACTGACCAAGCATTACCCGCTGATCTCATCAAGAGAGGACTGGCAGTTGAGGATCCCACTGCCCCACATGGCCTTCGTCTTGTAATTGAAGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATTAAGACATGGGTCGAAGAATATGTCTCCTTGTATTACCCTTCAGATGTAGCAGTTCAACAGGATAAGGAGCTGCAAGCTTGGTGGAAAGAAGCTGTAGAAAAGGGTCATGCAGACTTGAAAGATAAGCCATGGTGGCCTAGGATGCAAACTCTTGAAGACCTTATTCATTCCTGTTCTATAATTATATGGACTGGTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAATATCCATATGGAGGTTTAATCTTGAACCGTCCAACTATGAGCAGAAGATTTATCCCAGAACCAGGAACTAAAGAATATGATGAGATGGTGAAGAGTTCTCAAAAGGCTTATCTTAGAACAATCACACCAAAGTACCAAACCCTTATTGACATTTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGGTATACCTTGGGCAGAGGGACACAGATTTTTGGACATCTGATTCAAAGGCAATCGAAGCCTTTGAAAAGTTTGGAACTAAGCTGACAGAAATAGAGGGGAAAATCACAGGAAGGAACAATGATCCAAGTTTGAGAAATCGTTTTGGACCAATTCAGTTGCCTTACACATTGCTCTATCGTTCTAGTGAGGAAGGAATGACTTTTAAAGGAATTCCCAACAGTATCTCTATCTAA 2556 0.4131 MLPIFGNKSQKIKGTVVLMPKNVLDFNAVVSVGSGGVGGAIDAATSFLGRSVSMQLISATKTDSNGDGKVGSEAYLDKHLPTLPTLGARQDAFSVYFEWNADFGIPGAFYIKNFMTDEFFLVSVTLEDIPNHGTIHFLCKSWIYNFNRYHKKGRIFFDNNTYLPTATPSPLVKYREEELKNLRGDGTGERQIYDRIYDYDVYNDLGDPDHGNARPVLGGSSTHPYPRRVRTGRKPTKTDPNSEQLGEIYVPRDENFGHLKSSDFLTYGIKSLSQDVIPMFQSAIFDLSVTKSEFDSFDDVHQLYEGGIKLPTNIISQISPLPVLSEIFRTDGESVLKFPPPHVTRVSKSAWMTDDEFAREMVAGVNPCVIRRLQEFPPRSTLDPTLYGDQTSTITKEQLEINMGGVTVDQAIGSLRLFILDYQDAFMPFLTKINSLPSAKAYATRTILLLKDDGTLKPLAIELSKPHPNGVQFGAESKVVLPAIEGVESTIWLLAKAHVIVNDSGYHQLISHWLNTHAVMEPFVIATNRNLSVVHPIYKLLLPHYRDTININGLARQSLINAGGIIEQSFLPGPYSIEMSSAVYKNWVFTDQALPADLIKRGLAVEDPTAPHGLRLVIEDYPYAVDGLEIWDAIKTWVEEYVSLYYPSDVAVQQDKELQAWWKEAVEKGHADLKDKPWWPRMQTLEDLIHSCSIIIWTGSALHAAVNFGQYPYGGLILNRPTMSRRFIPEPGTKEYDEMVKSSQKAYLRTITPKYQTLIDISVIEILSRHASDEVYLGQRDTDFWTSDSKAIEAFEKFGTKLTEIEGKITGRNNDPSLRNRFGPIQLPYTLLYRSSEEGMTFKGIPNSISI* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1030 851 SMART LH2_4 10 159 IPR001024 GO:0005515
Apr10g1030 851 Gene3D - 485 850 - -
Apr10g1030 851 ProSitePatterns Lipoxygenases iron-binding region signature 1. 507 521 IPR020833 GO:0016702|GO:0046872
Apr10g1030 851 PRINTS Plant lipoxygenase signature 127 145 IPR001246 GO:0016491
Apr10g1030 851 PRINTS Plant lipoxygenase signature 154 175 IPR001246 GO:0016491
Apr10g1030 851 PRINTS Plant lipoxygenase signature 193 209 IPR001246 GO:0016491
Apr10g1030 851 PRINTS Plant lipoxygenase signature 224 243 IPR001246 GO:0016491
Apr10g1030 851 PRINTS Plant lipoxygenase signature 291 312 IPR001246 GO:0016491
Apr10g1030 851 PRINTS Plant lipoxygenase signature 336 352 IPR001246 GO:0016491
Apr10g1030 851 PRINTS Plant lipoxygenase signature 375 394 IPR001246 GO:0016491
Apr10g1030 851 PRINTS Plant lipoxygenase signature 442 466 IPR001246 GO:0016491
Apr10g1030 851 PRINTS Plant lipoxygenase signature 764 778 IPR001246 GO:0016491
Apr10g1030 851 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 851 - -
Apr10g1030 851 SUPERFAMILY Lipoxigenase 163 851 IPR036226 -
Apr10g1030 851 Gene3D - 349 484 - -
Apr10g1030 851 PRINTS Lipoxygenase signature 489 506 IPR013819 GO:0016702|GO:0046872
Apr10g1030 851 PRINTS Lipoxygenase signature 507 524 IPR013819 GO:0016702|GO:0046872
Apr10g1030 851 PRINTS Lipoxygenase signature 527 547 IPR013819 GO:0016702|GO:0046872
Apr10g1030 851 MobiDBLite consensus disorder prediction 210 243 - -
Apr10g1030 851 Gene3D - 163 259 - -
Apr10g1030 851 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 161 851 IPR013819 GO:0016702|GO:0046872
Apr10g1030 851 PANTHER LIPOXYGENASE 1 851 IPR000907 GO:0016702|GO:0046872
Apr10g1030 851 Gene3D - 260 348 IPR027433 -
Apr10g1030 851 Pfam PLAT/LH2 domain 65 157 IPR001024 GO:0005515
Apr10g1030 851 ProSitePatterns Lipoxygenases iron-binding region signature 2. 534 544 IPR020834 GO:0016702|GO:0046872
Apr10g1030 851 CDD PLAT_LH2 11 159 IPR042057 -
Apr10g1030 851 Gene3D PLAT/LH2 domain 4 162 - -
Apr10g1030 851 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 10 162 IPR036392 GO:0005515
Apr10g1030 851 Pfam Lipoxygenase 171 833 IPR013819 GO:0016702|GO:0046872
Apr10g1030 851 ProSiteProfiles PLAT domain profile. 24 157 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1030 Apr-Chr10 22686015 22691045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1030 9 851 Acyl Lipid Metabolism Gene Families AT1G55020 57.176 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1030 K15718 - gmx:547835 1431.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1030 10 22686015 22691045 Apr10g1030 10 22686015 22691045 ECH