Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1028 ATGATTTCAGGTGTGACAGGTTTGCTGAATAGGGGTCAAAAGCTGAAGGGGACAGTGGTGTTGATGCGTAAGAATGTGTTGGACATAAACGAAATTACATCGGCTCAAATTGATGCCCTCACTTCGTTTGCGGGTCAATCTGTGGGGCTTCAGCTGATCAGTGCAACCAGTGCTGATGGAACTGGAAAGGGTAAAGTCGGAAAACTAACCTATTTGGAAGGTCTTATTGCCTCCCTACCAACATTGGGAGCTGGCCAATCGGCTTTCGACATTCATTTTCAATGGGACAGTGATATGGGAATTCCAGGAGCGTTTTATATCAGAAATTATATGCAAGTTGAGTTCTTCCTTGTTAGTTTGACTCTTGAAGATGTTCCCAACCAAGGAACCATCCACTTTGTTTGCAACTCATGGATTTACAATTACGCTAAATTCTACAATAAAACTGATCGCATTTTCTTTGCCAACAAGACATATCTCCCAAGTGACATGCCCGCTCCACTAGTCAAGTATAGAGAAGATGAATTGAAGTCTTTAAGAGGAAATGGAACAGGAGAGCGCAAAGAACATGAAAGGATTTATGATTATGATGTCTACAATGATTTGGGTGACCCAGACTCAAATAGCAGATTGGCTCGTCCAGTTCTAGGAGGAAACAGCACCTTGCCTTACCCTCGCAGGGGAAGAACTGGTAGAAAACCATCTAAGAAAGATCCTAAAAGTGAGAGCCGCAGTGACTCTGTCTACATTCCAAGAGATGAATCATTTGGTCACTTGAAGTCATCAGATTTCCTTGTTTTTGCGCTCAAATCTGCAACTCAAAATGTCATACCTCAATTACAATCTGTACTTACACTACAATTTAATCAGCCTGAATTTAATAACTTTGATGATGTGCGTGGACTCTATGATGGTGGAATTAAGTTACCTACTAATATACTTAGCCAAATTAGCCCTATTCCATTATTCAAAGAACTTTTCCGAACTGATGGTGAACAAGTCCTTAAGTTTCCACCACCTAAAGTGATTCAAGTGAATCAATCTGGATGGATGACTGACGAAGAATTTGCAAGAGAGATGATTGCTGGTGTAAATCCACACATTATTAAAAGACTTCAGGAGTTCCCGCCAAAGAGCAAGCTAGATAGCCAGCTCTACGGTGATAACACTAGTACCATAACCAAAGAACAATTGGAGCCAAACTTGGGTGGGCTCACTGTAGAACAGGCTATCCAAAACAACAAATTGTTCATACTAGACCACCATGATCCAGTCATTCCATATTTGAGGCGAATTAATGCAACTGACACAAAGGCCTATGCTACTAGGACCTTCCTTTTGTTGCAAGATAATGGAACTTTAAAGCCACTGGCCATTGAGCTAAGTAAACCACATCCTCAGGGTGATAATTTTGGTCCTATTAGTAACGTTTACCTTCCAGCAAGTCAAGGTGTTGATGCTTCCATTTGGCAACTTGCAAAGGCTTATGTAATCGTAAATGACTCTTGCTATCACCAACTTGTCAGCCATTGGTTGAACACTCATGCTGTTGTTGAGCCCTTCGTCATAGCAACAAACAGGCATCTTAGTGTGGTTCACCCTATTCACAAGCTTTTGCTTCCACACTATCGTGACACAATGAACATCAACGCACTTGCAAGGAATGTCCTAGTCAATGCAGAGGGTATTATAGAATCAACATTCTTGTGGGGTAATTATGCCTTGGAAATGTCCGCTGTTGTATACAAGGATTGGGTTTTCACTGAGCAAGCACTACCTGCTGATCTTGTCAAGAGAGGAGTGGCTGTTGAAGATGCATCTTCTCCACATGGCCTTCGTCTTTTGATAGAGGACTATCCTTATGCTGCTGATGGGTTAGAGATATGGGATGCTATCAAGTCATGGGTACAAGAATACGTCTTTTTCTATTACAACTCAGACGCTGTTGTTGCACAAGATACTGAACTCCAAGCTTTTTGGAAAGAGCTTGTTGAAGTTGGACATGGTGACAAGAAAAATGAAACATGGTGGCCAAGGATGCAAACACGTGATGATTTGATCCAGTCTTGCACCATCCTCATATGGTGTGCTTCAGCCCTTCACGCAGCTGTTAATTTTGGACAGTATCCATATGGTGGCTATATCCTTAACAGACCAACACTTAGTAGGCAATTCATGCCTGAGATAGGGTCCCCTGAGTATGATCAGCTTTCTCAGAACTTTCAAAAGGTGTTTTTGAAAACTATTACAGGAAAGAGTGATGCCCTTAAAGACCTTACAATTATTGAGATCTTATCAAGACATGCTTCTGATGAACTTTACCTTGGACAAAGAGATGAAGGTGATGTTTGGACTTCTGATACACAGCCATTAGAGGCATTCAAGAGGTTTGGACAAAGGTTGGCCGCGATTGAGCAAAAGCTTGTCCAAAGGAACAATGATGCGACACTGAGGAACCGAAATGGACCAGTGCAGATGCCCTACACTTTGCTTTATCCTTCAAGTGAGGAAGGGTTGACTTGCAGAGGCATTCCTAATAGTATCTCTATCTAA 2553 0.4183 MISGVTGLLNRGQKLKGTVVLMRKNVLDINEITSAQIDALTSFAGQSVGLQLISATSADGTGKGKVGKLTYLEGLIASLPTLGAGQSAFDIHFQWDSDMGIPGAFYIRNYMQVEFFLVSLTLEDVPNQGTIHFVCNSWIYNYAKFYNKTDRIFFANKTYLPSDMPAPLVKYREDELKSLRGNGTGERKEHERIYDYDVYNDLGDPDSNSRLARPVLGGNSTLPYPRRGRTGRKPSKKDPKSESRSDSVYIPRDESFGHLKSSDFLVFALKSATQNVIPQLQSVLTLQFNQPEFNNFDDVRGLYDGGIKLPTNILSQISPIPLFKELFRTDGEQVLKFPPPKVIQVNQSGWMTDEEFAREMIAGVNPHIIKRLQEFPPKSKLDSQLYGDNTSTITKEQLEPNLGGLTVEQAIQNNKLFILDHHDPVIPYLRRINATDTKAYATRTFLLLQDNGTLKPLAIELSKPHPQGDNFGPISNVYLPASQGVDASIWQLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYALEMSAVVYKDWVFTEQALPADLVKRGVAVEDASSPHGLRLLIEDYPYAADGLEIWDAIKSWVQEYVFFYYNSDAVVAQDTELQAFWKELVEVGHGDKKNETWWPRMQTRDDLIQSCTILIWCASALHAAVNFGQYPYGGYILNRPTLSRQFMPEIGSPEYDQLSQNFQKVFLKTITGKSDALKDLTIIEILSRHASDELYLGQRDEGDVWTSDTQPLEAFKRFGQRLAAIEQKLVQRNNDATLRNRNGPVQMPYTLLYPSSEEGLTCRGIPNSISI* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1028 850 Gene3D - 483 849 - -
Apr10g1028 850 Pfam PLAT/LH2 domain 60 154 IPR001024 GO:0005515
Apr10g1028 850 CDD PLAT_LH2 14 156 IPR042057 -
Apr10g1028 850 Gene3D - 160 259 - -
Apr10g1028 850 PRINTS Plant lipoxygenase signature 123 141 IPR001246 GO:0016491
Apr10g1028 850 PRINTS Plant lipoxygenase signature 151 172 IPR001246 GO:0016491
Apr10g1028 850 PRINTS Plant lipoxygenase signature 190 206 IPR001246 GO:0016491
Apr10g1028 850 PRINTS Plant lipoxygenase signature 223 242 IPR001246 GO:0016491
Apr10g1028 850 PRINTS Plant lipoxygenase signature 290 311 IPR001246 GO:0016491
Apr10g1028 850 PRINTS Plant lipoxygenase signature 335 351 IPR001246 GO:0016491
Apr10g1028 850 PRINTS Plant lipoxygenase signature 374 393 IPR001246 GO:0016491
Apr10g1028 850 PRINTS Plant lipoxygenase signature 440 464 IPR001246 GO:0016491
Apr10g1028 850 PRINTS Plant lipoxygenase signature 762 776 IPR001246 GO:0016491
Apr10g1028 850 ProSiteProfiles PLAT domain profile. 25 153 IPR001024 GO:0005515
Apr10g1028 850 PRINTS Lipoxygenase signature 487 504 IPR013819 GO:0016702|GO:0046872
Apr10g1028 850 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Apr10g1028 850 PRINTS Lipoxygenase signature 525 545 IPR013819 GO:0016702|GO:0046872
Apr10g1028 850 SUPERFAMILY Lipoxigenase 160 850 IPR036226 -
Apr10g1028 850 ProSitePatterns Lipoxygenases iron-binding region signature 1. 505 519 IPR020833 GO:0016702|GO:0046872
Apr10g1028 850 PANTHER LIPOXYGENASE 7 850 IPR000907 GO:0016702|GO:0046872
Apr10g1028 850 MobiDBLite consensus disorder prediction 235 249 - -
Apr10g1028 850 Pfam Lipoxygenase 168 833 IPR013819 GO:0016702|GO:0046872
Apr10g1028 850 Gene3D - 349 482 - -
Apr10g1028 850 Gene3D - 260 348 IPR027433 -
Apr10g1028 850 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 7 850 - -
Apr10g1028 850 MobiDBLite consensus disorder prediction 205 249 - -
Apr10g1028 850 SMART LH2_4 13 156 IPR001024 GO:0005515
Apr10g1028 850 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 158 850 IPR013819 GO:0016702|GO:0046872
Apr10g1028 850 ProSitePatterns Lipoxygenases iron-binding region signature 2. 532 542 IPR020834 GO:0016702|GO:0046872
Apr10g1028 850 Gene3D PLAT/LH2 domain 4 159 - -
Apr10g1028 850 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 159 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1028 Apr-Chr10 22658876 22663795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1028 13 850 Acyl Lipid Metabolism Gene Families AT1G55020 58.519 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1028 K15718 - gmx:100127400 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1028 10 22658876 22663795 Apr10g1028 10 22658876 22663795 ECH