Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1004 ATGGTTGAAAGCTTCAACCGGACTGATTCAATTGAGTTCTGTGAAGCTGAAATGGGGAAAGGTGGTTTTCAGGAATCTGGTCCTGTGTTGAAGAAGTCGAGAAAACAAATTTTGGCTTCTCAAAATGTGGATAATTGTGAAGAGGAAGACAGCCAGGACAGATTTGGTGACATGCCAGACTGTCTTATTCATCATATTTTGTCATTTATGGAGACAAAGGACGCAATTCGAACTTCCGTTTTGTCAAAAAGGTGGAGGTATATTTGGACTTCAGTTCCATGCCTGAACTTCAGCAGCAAATCATTCACGAGGTTGGTTGATTTCAAGAAGTTTGTGCAATGGGTCCTATCCCATCGTGATTCTTCCCATGTCCAATTACTTGTTTACAATCGGTTTGGGGTAGATTATGCAACAGATCAATATCTATTGAATAAGGTTATTGAATATGCAGCATCACATGGTGTTGAGGAAATCAAGATCAATCTTCGGGCAAAGACCTCTGGCAGTCCTCCTGTTGAAATCCCTTTGTCTCTATTTACTTGCCAATCCTTGAAAAAGCTTGAGTTAAAAGATTGTCATCCTACAAATGTGTCATCCCCTTTAGGTTGCAAATCATTGGACGTTTTGCATCTGGAACATTTCTCAATGTATCCTGCTGCAGCTGATTTTTCAAATCCATTTGCAAGTTTATCCGGACTTTTTGGCTTTATGACATTGACAACTTTGCATCTAATTAGCTTCACTCTATGTTATACAGGAACTGACTGTTTGGATCCATTTGGTAATTGTGTCAATTTAAAGAATTTGCACTTAAGTGAAATGTCGTTTAAGTCAGATTTGAACCCTAAGGCTTTTGTGATATCTGGTCCAAAACTCAATAACTTGAGTCTAATGTGCAACCGCTTTAAATGTAAAATTGTAGTTGCTGCACCACAGCTCACCAATTTCAATTACTTGTATTCTACACCTCGTGCCTTCTTTGAGTTTAGTCTTCCTTCTTTGGATGGCTTGATCATTGATATACATGAACCACATCGATTGGAAAAATCTCATCGAAAGAAAAGGGAGGAGACTTTACATGGTTTGATCAACATGTTGCGCGGACATCATAATGCTGAAGCTGTGAAACTATCCTTCTGTACAGTTGAGGTTACTTGTGGGACTGCAGCGTTGTTAAAGCCAGAATGTTTGCCTTCTAGTGAATGGAAGTCATTGAACTTCGGAGTGGGATCAACGTATAAAATCTTCATCAACAAGCTTGACGATATAACTGCCTATTACCGCAATTGCTTTCAGGAATCAGACTTTGAGATTTTGACTGTTTAG 1326 0.3906 MVESFNRTDSIEFCEAEMGKGGFQESGPVLKKSRKQILASQNVDNCEEEDSQDRFGDMPDCLIHHILSFMETKDAIRTSVLSKRWRYIWTSVPCLNFSSKSFTRLVDFKKFVQWVLSHRDSSHVQLLVYNRFGVDYATDQYLLNKVIEYAASHGVEEIKINLRAKTSGSPPVEIPLSLFTCQSLKKLELKDCHPTNVSSPLGCKSLDVLHLEHFSMYPAAADFSNPFASLSGLFGFMTLTTLHLISFTLCYTGTDCLDPFGNCVNLKNLHLSEMSFKSDLNPKAFVISGPKLNNLSLMCNRFKCKIVVAAPQLTNFNYLYSTPRAFFEFSLPSLDGLIIDIHEPHRLEKSHRKKREETLHGLINMLRGHHNAEAVKLSFCTVEVTCGTAALLKPECLPSSEWKSLNFGVGSTYKIFINKLDDITAYYRNCFQESDFEILTV* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1004 441 ProSiteProfiles F-box domain profile. 52 105 IPR001810 GO:0005515
Apr10g1004 441 Pfam F-box domain 57 92 IPR001810 GO:0005515
Apr10g1004 441 PANTHER CYCLIN-LIKE F-BOX 39 441 - -
Apr10g1004 441 SUPERFAMILY L domain-like 174 319 - -
Apr10g1004 441 Gene3D Ribonuclease Inhibitor 144 335 IPR032675 -
Apr10g1004 441 Gene3D - 39 95 - -
Apr10g1004 441 PANTHER F-BOX PROTEIN-LIKE 39 441 - -
Apr10g1004 441 SMART fbox_2 58 98 IPR001810 GO:0005515
Apr10g1004 441 SUPERFAMILY F-box domain 52 107 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1004 Apr-Chr10 22492865 22496957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1004 32 216 EF-hand Containing Proteins AT5G41840 29.612 2.52e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1004 - - vun:114167379 747.273