LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g0987	ATGGACTTCCCCAATAATTCTCTGTCTTTGAGATCGAGCTTGACGTTTGGAGAGATTTTGTGTTCGGTGTTCATTCCGTTGATCGGAATAGCTGAAGCTTTGTTTTACACTTTCGCTGGTTGCTTCGATTTCAATCCCAAGAAGAAGAAGAAACCTTCTCCTACCTTCAACGATATTCTCACACTCGCCAAGGATTCTCCATTTACTGTTAATGAAATTGAGGCGTTGCGTGAGTTGTTCAAGAAGTTAAGTAGTTCAATCATTGATGATGGCCTCATCCACAAGGAAGAGCTCACTTTGGCACTGTTGAAGACCCCAACTGGAGAGAATCTTTTCCTAGACAGGGTGTTTGATCTATTCGATGAAAAAAGAAATGGCGTTATAGAATTTGAAGAGTTTGTGCATGCGCTCAGTGTCTTTCATCCTTATACTCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACAGGATATATTGAGCGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGAATCTGGAAGATGAAGTCCTTGATGTCATTATTGATAAGACATTTCAAGATGCTGATGCTGACAAGGATGATAAGATAAGTAAAGAAGAATGGAAGGCTTTTGTTATTCGGCACCCAACACTCTTAAAGCACCTGACTCTTCCTTATCTGAAGGACGTCACTACAGTATTTACCAGTTTCATTTTCAACACCGAAGTTGATGATTCTCACTGGCAATTCAATGGCAATCATAAACATTAA	789	0.3942	MDFPNNSLSLRSSLTFGEILCSVFIPLIGIAEALFYTFAGCFDFNPKKKKKPSPTFNDILTLAKDSPFTVNEIEALRELFKKLSSSIIDDGLIHKEELTLALLKTPTGENLFLDRVFDLFDEKRNGVIEFEEFVHALSVFHPYTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMNLEDEVLDVIIDKTFQDADADKDDKISKEEWKAFVIRHPTLLKHLTLPYLKDVTTVFTSFIFNTEVDDSHWQFNGNHKH*	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g0987	262	ProSiteProfiles	EF-hand calcium-binding domain profile.	108	143	IPR002048	GO:0005509
	Apr10g0987	262	SMART	efh_1	193	221	IPR002048	GO:0005509
	Apr10g0987	262	SMART	efh_1	149	177	IPR002048	GO:0005509
	Apr10g0987	262	SMART	efh_1	112	140	IPR002048	GO:0005509
	Apr10g0987	262	ProSiteProfiles	EF-hand calcium-binding domain profile.	189	224	IPR002048	GO:0005509
	Apr10g0987	262	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	6	251	-	-
	Apr10g0987	262	SUPERFAMILY	EF-hand	62	242	IPR011992	-
	Apr10g0987	262	Pfam	EF-hand domain pair	148	217	IPR002048	GO:0005509
	Apr10g0987	262	CDD	EFh	113	174	IPR002048	GO:0005509
	Apr10g0987	262	PRINTS	Recoverin family signature	116	137	-	-
	Apr10g0987	262	PRINTS	Recoverin family signature	163	181	-	-
	Apr10g0987	262	PRINTS	Recoverin family signature	209	229	-	-
	Apr10g0987	262	ProSitePatterns	EF-hand calcium-binding domain.	202	214	IPR018247	-
	Apr10g0987	262	Gene3D	-	60	252	-	-
	Apr10g0987	262	Pfam	EF hand	113	138	IPR002048	GO:0005509
	Apr10g0987	262	ProSiteProfiles	EF-hand calcium-binding domain profile.	145	180	IPR002048	GO:0005509
	Apr10g0987	262	PANTHER	CALCINEURIN B	6	251	IPR045198	GO:0005509\|GO:0019722\|GO:0019900

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g0987	Apr-Chr10	22344911	22348371	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g0987	40	252	EF-hand Containing Proteins	AT5G55990	60.094	5.17e-89	261

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g0987	K06268		-	gmx:100801943	439.884