Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0984 ATGGCTCAGCAGCCGTTCGATCCGTACTACCTTTATCAACAAGATGAGCGCAACAACATCAACACGCTCTTCGTCTCCGGCCTCCCGGACGACATCAAGGCGCGTGAAATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCGTGCCAACTCAAGTACACCGGACGCGCTAACCAGGTCGTAGCATTTGCTACATTTTTCAATCACCAATCAGCAATGGCAGCGTTGCACGCCTTGAATGGTGTGAAATTTGATCCTCAAACGGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGTAAACCAGGTGGTGGAGCCTATGTGGTTATTGATAAAAGGTCGAAAGGGGAGACTGATGTTCAGGGATCATCCAGTGATGATGGTGACAGTGATCCCGATGAACCATTGGAAAGTGGCAGCAACCATGGTGATTTAGCAATCACAAAAAGTGGTGAAACTGCTGTTATTTCTGAGAATGCTGTTCCTGTGGAGCAACATGAAAAGGGTGGTGATGGAGGACCTTGTTCCACTCTCTTTATCGCAAATCTTGGTCCAAACTGCACAGAAGATGAATTGAAACAAGCTTTTTCTGTATATACTGGATTCAATATGGTCAAAATGCGTTCTAGAGGAGGAATGCCTGTTGCATTTGCTGATTTTGAGGAAGTTGATCAAGCTGCTAAGGTCATGGAGGAGCTTCAGGGCAGCCTGCTGCATTCATCAGACCGGGGTGGCATGCACATAGAATATGCAAGGTCCAAAATGAGGAGGCATTAG 795 0.4755 MAQQPFDPYYLYQQDERNNINTLFVSGLPDDIKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGETDVQGSSSDDGDSDPDEPLESGSNHGDLAITKSGETAVISENAVPVEQHEKGGDGGPCSTLFIANLGPNCTEDELKQAFSVYTGFNMVKMRSRGGMPVAFADFEEVDQAAKVMEELQGSLLHSSDRGGMHIEYARSKMRRH* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0984 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Apr10g0984 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Apr10g0984 264 Gene3D - 17 108 IPR012677 -
Apr10g0984 264 SUPERFAMILY RNA-binding domain, RBD 20 245 IPR035979 GO:0003676
Apr10g0984 264 PANTHER RNA-BINDING PROTEIN-RELATED 11 253 - -
Apr10g0984 264 MobiDBLite consensus disorder prediction 101 151 - -
Apr10g0984 264 Gene3D - 177 264 IPR012677 -
Apr10g0984 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Apr10g0984 264 CDD RRM_RBPMS_like 21 96 - -
Apr10g0984 264 SMART rrm1_1 183 255 IPR000504 GO:0003723
Apr10g0984 264 SMART rrm1_1 22 93 IPR000504 GO:0003723
Apr10g0984 264 CDD RRM_scw1_like 180 258 - -
Apr10g0984 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Apr10g0984 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0984 Apr-Chr10 22325793 22329398 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0984 - - gmx:100783764 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0984 10 22325793 22329398 Apr10g0984 10 22325793 22329398 ECH