Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0972 ATGATTACAGTAAGCGTAAAATGGCAAAAAGAGCTCTTCAAAGATGTAGAAATTGACACTACCCAGTCCCCTTATGTTTTCAAGTGCCAATTGTATGATTTGACTGGCGTGCCTCCCGAAAGACAAAAGATTATGGTTAAGGGTGGTCTTTTAAAGGATGATGCTGATTGGTTGACTTTAGGAGTGAAAGAGGGTCAAAAGTTAATGATGATGGGAACGGCTGATGAAGCTGTGAAGTCTCCAGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTGGACATACTGCAGGCCTTTTCAATTTGGGAAATACGTGTTATATGAACTCAACATTGCAATGCCTCCATTCTGTGCCAGAGTTGAAGTCAGCTTTGATTAAGTACTCACATTCAGGACGAAATAATGATGTTGATCAGTCTTCTCATATGTTGACCATTGCAACCCGTGATTTGTTCAATGAGCTTGATAAAAGTGTCAAGCCTGTGGCGCCAATGCAATTTTGGATGGTATTACGGAAAAAATATCCTCAGTTTGGCCAGCTGCATAATGGTGTTTTCATGCAACAGGATGCTGAAGAATGTTGGACTCAACTTCTATACACACTTTCTCAGTCCCTCAGAGCCCCTGGAACTAGTGAAAATCCCGATGCTGTGAAGGCACTCTTTGGCATAGAACTTATTAGCAGGATTCACTGTCAAGAGAGTAACGAAGAAAGCTCAGAAACAGAATCTGTTTATTCACTTAAGTGCCACATATCACAGGAGGTTAACCATTTGCATGAAGGACTAAAACAAGGGTTAAAATCAGAGTTGGAGAAGGCTTCCCCTGCTCTGGGCCGTAGTGCTACCTACTTGAAGGAATCATGCATCAATGCCCTGCCAAGGTACTTGACTATTCAGTTTGTCCGTTTTTTTTGGAAGAGGGAATCCAACCAAAAGGCTAAGATTTTGCGGAAAGTAGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCAGACGAACTTCGTAAAAAATTGGAAGCTCCTAGACAGATCCTAAGAAATGAAGAAGGCAAAAGACTTGGTCTGAAAGTGAATGAGAAAAGTTCTGTTCTGAAGGAAAATGATGTAAAAATGTCTGATGCTGAGGGATCATCGAATGGAGGGGAGCCATCTGTAGTTCCCATGGAGGAGGGTGAAAAAGAAACACAGATGACTGGAATTTATGATTTGGTTGCTGTATTAACCCACAAGGGTAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCCAAACCAAAAGTAGAAGAAGACATCACTAGACTATCTGGAGGAGGTGATTGGCATATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTATAA 1440 0.4097 MITVSVKWQKELFKDVEIDTTQSPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWLTLGVKEGQKLMMMGTADEAVKSPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIKYSHSGRNNDVDQSSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRAPGTSENPDAVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGLKQGLKSELEKASPALGRSATYLKESCINALPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELRKKLEAPRQILRNEEGKRLGLKVNEKSSVLKENDVKMSDAEGSSNGGEPSVVPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKVEEDITRLSGGGDWHMAYIIMYKARVVSV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0972 479 SUPERFAMILY Cysteine proteinases 102 473 IPR038765 -
Apr10g0972 479 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
Apr10g0972 479 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
Apr10g0972 479 Gene3D Cysteine proteinases 98 478 - -
Apr10g0972 479 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Apr10g0972 479 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 410 428 IPR018200 GO:0004843|GO:0006511
Apr10g0972 479 Gene3D - 1 73 - -
Apr10g0972 479 SMART ubq_7 2 73 IPR000626 GO:0005515
Apr10g0972 479 Pfam Ubiquitin family 2 73 IPR000626 GO:0005515
Apr10g0972 479 CDD Ubl_USP14_like 1 75 - -
Apr10g0972 479 Pfam Ubiquitin carboxyl-terminal hydrolase 105 472 IPR001394 GO:0004843|GO:0016579
Apr10g0972 479 MobiDBLite consensus disorder prediction 375 396 - -
Apr10g0972 479 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 478 IPR044635 GO:0004843|GO:0016579|GO:0043161
Apr10g0972 479 CDD Peptidase_C19A 105 473 - -
Apr10g0972 479 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
Apr10g0972 479 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 478 - -
Apr10g0972 479 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 475 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0972 Apr-Chr10 22217790 22226286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0972 104 472 Miscellaneous Gene Families AT2G24640 21.907 4.56e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0972 K11843 - gmx:100787481 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0972 10 22217790 22226286 Apr10g0972 10 22217790 22226286 ECH