Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g0958 | ATGAGAAACATTGGATGTCGTCTTAGATTTTCGACTTTGATCGAACCACACAACAAAAACGCAAGTACGAGGATGTTTGTGAGATCCTCCTATCTACCTATACCTCATCGAACGATTCCTCAAGCCATGGGACAGGATCTAGATTTTGTTAACGTTGCACATAGCCACGTCATTCACTCTCACTGGGACAAACTCCACCCTCTATCACCCTCTCTCACCCCATTCAGAGTCAAACACCTTCTCCTCAAACTCCAAAACGACAACGTTCTCTCCTTAAAATTCTTCAATTGGGTTCTCAAACACAACCCTTCTTCCCACACCCTCGAATCCCACTCCATATTCCTTCACATCCTCACCAAAAACCGCAAATTCAAAACCACCCAAACCATCCTCAGAAAAATCCTTGCTTCACCCACTATGAACCTTCCTTCTAAGCTCTTTGAAGCATTGTTATACTCATACCGTCTTTGTAACTCTTCCCCTTTTGTTTTTGACGCTCTTTTCAAGACCTTTGCTCACACCAACAAGTTTAGAAACGCCACTGACACTTTCATTCGAATGAAGGAATATGGGTTCTACCCCAATGTTGAATCTTGCAATGCATTTCTAAGTTCATTGCTTCAGCTTCATAGAGCTGATATAGCATTGGCGTTTTATCGTGAAATGCGTCGTGTTTGCATTTCGCCTAATGTGTACACTCTCAACATGGTTATTTGTGCTTATTGCAAGTTAGGGGAACTGCAAAAGGCTCTTGAGGTGTTGGAGAGCATGAAGAACATGGGTTTGAGTCCTAATGTTGTGTCCTTCAACACGATGATTGCAGGTTGTTGTAACAAGGGTTTGCTTGGTTTGGCCCTGAAGGTTAAGTCTTCGATGGGGAACAATGGGGTGCACCCAAATGTGGTTACTTTTAACACTATTATTAATGGGTTTTGTAAGGAGAGGAAGTTGCATGAAGCAAATGGGATTTTCACTGAGATGAAGGTTGCCAATGTGGCTCCTAATACTGTGACTTACAATACTTTGATAAATGGGTATAGTCAAGTTGGAAACAGTGAAATGGGTAATAGGCTTTATGAAGAGATGGTGAGAAATGAGGTTAAGGCTGATATTTTGACTTATAATGCATTGATTTTGGGTCTGTGTAAGGACGGGAAGACAAAGAAAGCTGCAGGGCTGGTTAGAGAGCTTGATAAGGAGAACTTGGTCCCCAATGCCTCCACCTTTTCTGCCCTTATTACTGGGCAGTGTGTGAGAAACAACTCGGAGCGTGCCTTTCATATTTATAGAAGCATGATACGGAGTGGTTGTAATCCAAATGAGAATACTTTCCAAATGTTGATATCTTCCTTCTGCACGAATGAAGACTTTGATGGAGCTGTGCAAGTCTTGAGGGACATGTTGGACAGATTGGTAACCCCTGTTCCTAGTACCTTATATGAGCTCTGTAGTGGACTTTGCAGATGCGGGAGAAATCGGTTGGCGTTGGCCCTGTGTGATGAGATGGAAGCGAGGCATCTATTGCCAGAAGGTTTTGACAAAGAAAAAGTTGCCATCATCCATATAGAAAATGAGACAAGTAACTGA | 1587 | 0.4253 | MRNIGCRLRFSTLIEPHNKNASTRMFVRSSYLPIPHRTIPQAMGQDLDFVNVAHSHVIHSHWDKLHPLSPSLTPFRVKHLLLKLQNDNVLSLKFFNWVLKHNPSSHTLESHSIFLHILTKNRKFKTTQTILRKILASPTMNLPSKLFEALLYSYRLCNSSPFVFDALFKTFAHTNKFRNATDTFIRMKEYGFYPNVESCNAFLSSLLQLHRADIALAFYREMRRVCISPNVYTLNMVICAYCKLGELQKALEVLESMKNMGLSPNVVSFNTMIAGCCNKGLLGLALKVKSSMGNNGVHPNVVTFNTIINGFCKERKLHEANGIFTEMKVANVAPNTVTYNTLINGYSQVGNSEMGNRLYEEMVRNEVKADILTYNALILGLCKDGKTKKAAGLVRELDKENLVPNASTFSALITGQCVRNNSERAFHIYRSMIRSGCNPNENTFQMLISSFCTNEDFDGAVQVLRDMLDRLVTPVPSTLYELCSGLCRCGRNRLALALCDEMEARHLLPEGFDKEKVAIIHIENETSN* | 529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 299 | IPR002885 | - | |
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 440 | 474 | IPR002885 | - | |
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 300 | 334 | IPR002885 | - | |
| Apr10g0958 | 528 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 9 | 526 | - | - | |
| Apr10g0958 | 528 | Gene3D | Tetratricopeptide repeat domain | 330 | 397 | IPR011990 | GO:0005515 | |
| Apr10g0958 | 528 | Gene3D | Tetratricopeptide repeat domain | 258 | 329 | IPR011990 | GO:0005515 | |
| Apr10g0958 | 528 | TIGRFAM | PPR: pentatricopeptide repeat domain | 198 | 231 | IPR002885 | - | |
| Apr10g0958 | 528 | TIGRFAM | PPR: pentatricopeptide repeat domain | 373 | 406 | IPR002885 | - | |
| Apr10g0958 | 528 | TIGRFAM | PPR: pentatricopeptide repeat domain | 232 | 266 | IPR002885 | - | |
| Apr10g0958 | 528 | TIGRFAM | PPR: pentatricopeptide repeat domain | 443 | 470 | IPR002885 | - | |
| Apr10g0958 | 528 | TIGRFAM | PPR: pentatricopeptide repeat domain | 337 | 370 | IPR002885 | - | |
| Apr10g0958 | 528 | TIGRFAM | PPR: pentatricopeptide repeat domain | 302 | 336 | IPR002885 | - | |
| Apr10g0958 | 528 | TIGRFAM | PPR: pentatricopeptide repeat domain | 408 | 441 | IPR002885 | - | |
| Apr10g0958 | 528 | TIGRFAM | PPR: pentatricopeptide repeat domain | 267 | 301 | IPR002885 | - | |
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 405 | 439 | IPR002885 | - | |
| Apr10g0958 | 528 | Pfam | PPR repeat | 436 | 467 | IPR002885 | - | |
| Apr10g0958 | 528 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 9 | 526 | - | - | |
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 195 | 229 | IPR002885 | - | |
| Apr10g0958 | 528 | Pfam | PPR repeat family | 229 | 278 | IPR002885 | - | |
| Apr10g0958 | 528 | Pfam | PPR repeat family | 370 | 417 | IPR002885 | - | |
| Apr10g0958 | 528 | Pfam | PPR repeat family | 299 | 346 | IPR002885 | - | |
| Apr10g0958 | 528 | Gene3D | Tetratricopeptide repeat domain | 92 | 257 | IPR011990 | GO:0005515 | |
| Apr10g0958 | 528 | Gene3D | Tetratricopeptide repeat domain | 398 | 518 | IPR011990 | GO:0005515 | |
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | IPR002885 | - | |
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 370 | 404 | IPR002885 | - | |
| Apr10g0958 | 528 | Pfam | PPR repeat | 484 | 505 | IPR002885 | - | |
| Apr10g0958 | 528 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 335 | 369 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr10g0958 | 162 | 516 | Glycosyltransferase | AT1G05670 | 29.781 | 1.13e-50 | 183 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g0958 | - | - | adu:107464028 | 757.673 |