Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0943 ATGGGGAGCTCTGAAGGGGTGGGAACCTCGACGAAGCAATATGGTGTCACGAAGCCCATATCAATGGCGGGCCCAACGGTTGCTGATTTGCAAAGGACTCTTGAATTGGAGAAGTTTCTCGTTGATTCCGGCCTTTACGAGAGCAAAGAGGAAGCTGCCAAAAGAGAAGAGGTCCTTAACCGACTTGGACAGGTAGTAACTAGTTGGGTAAAGCAACTTACCCGCCTAAGAGGATACACTGATCAAATGGTGGAAGATGCAAATGCTGTTATAATCACTTTTGGTTCTTATCGACTTGGTGTTCATGGTCCTGGGGCTGACCTAGACACACTATGCATTGGGCCATCCTACGTAAACCGAGGGGAGGATTTTTTCTACACATTACATGATATCCTAGCTAACATGGAGGAAGTCACAGAACTGCAACCAATTCCGGATGCTCATGTCCCGGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTTTATGCAAGTATTTCTCGCTTAATTGTACCTGAAGATTTGGATATATCTGATGTCTCTCTTCTACACAATGTGGATGAGCCTACAGTGCGAAGTTTGAATGGTTGTAGGGTTGCAGATCAAATTCTAAAGCTAGTTCCAAATACTGAGCATTTTCGTACAACACTCCGTTGCTTGAAGTTTTGGGCCAAAAGGCGAGGTGTTTATTCCAATGTGACAGGTTTTCTTGGTGGTGTAAACTTGGCGCTTCTTGTTGCCCGAGTGTGCCAGTTGTATCCAAATGCAGTTCCAAGCATGCTTGTCTCTCGATTCTTTAGGGTTTATACACAGTGGCGATGGCCAAATCCTGTAATGCTATGTCCAATAGAACAGAACGAGCTTGGGTTTTCTATGTGGGATCCTCGCAAAAATCCTCGTGATCGAACCCATCATATGCCAATCATCACTCCTGCCTATCCATGTATGAATTCCAGTTATAATGTTTCTATAAGCACACTTCGTGTTATGATGGAGCAGTTCCAGAATGGCAACAGGATCTGTGGGGAAATAGAACTGAATAAAGCCTGTTGGAGTTCTCTGTTTGAACAATACATTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGACATAGTTGCTGCCGATGTTGATGACTTGCGTGCATGGAAAGGTTGGGTGGAATCACGCCTTCGACAGCTGACTCTGATGATTGAGCGTGACACTTTTGGGAAGTTGCAGTGCCATCCCTATCCTCATGAGTATATGGATAATTCAAAGCAGTGTGCACATTGTGCTTTCTTTATGGGCTTGCAGAGGAAGCAGGGGGAAGTTGTTCAGGAAGGTCAGCAATTTGATATACGAGGGTCAGTGGAAGAATTTCGTCATTCTGTCAATATGTACAATTACTGGAAACCAGGGATGGACATTTATGTTTCTCATGTTCGTCGAAGGCAAATCCCTGGCTATGTGTTTCCTGATGGTCACAAACGATCGCGACCATCAAGGCCAACACCACAATTGGAGAATCCTCACAAATCATTTCATGAAGATGAGGTTTTTGGGACTAAACAAATTGAGAGAAACCACAAGAGGAAGTACAATGACAGGGTGGGTGAAAGGCTGGATGCATTGAAAAGACAATCTATCAATCCGCCTGTGCATAGCTTGGCAATACACAACAGCCTTCACTATAGTGGTTTGTCTGTTGATGCTATGGCTGATGGTCAAGAGTTGAGAAATGTGGAGGGTGCTCATTTGTCCAACAGCAGGCAAGATGATTTGGATCGAACAGAGTCTCCTGAACCTGCCTCAAATTCTAGTGTGATTACATCTGTTACCAGTGATGCTGGTTCTTCTGAGGATATTGGATCTGGTTATGTTGAGGATAGCACCAAGGGTGTTGAGGCGATAATTAATGGGAGGTTTGGGGATACTACTTATGGGGAGTCTGTGAAAAGTACAGTGGCAAGTGAAAATGAAGTATTACAAGATGAGCTACATGAGCAGTTAGAGCCCAATGCAGTGCTAGGGATGGTTCTTGATTCCAAGCGACAAGTTCGTTCAAATGCGGTGCAAAAGCCAGTTATAAGGAGATTGAGTGTAACATCGGCAGTGTGA 2106 0.4392 MGSSEGVGTSTKQYGVTKPISMAGPTVADLQRTLELEKFLVDSGLYESKEEAAKREEVLNRLGQVVTSWVKQLTRLRGYTDQMVEDANAVIITFGSYRLGVHGPGADLDTLCIGPSYVNRGEDFFYTLHDILANMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASISRLIVPEDLDISDVSLLHNVDEPTVRSLNGCRVADQILKLVPNTEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEQNELGFSMWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSISTLRVMMEQFQNGNRICGEIELNKACWSSLFEQYIFFESYKNYLQVDIVAADVDDLRAWKGWVESRLRQLTLMIERDTFGKLQCHPYPHEYMDNSKQCAHCAFFMGLQRKQGEVVQEGQQFDIRGSVEEFRHSVNMYNYWKPGMDIYVSHVRRRQIPGYVFPDGHKRSRPSRPTPQLENPHKSFHEDEVFGTKQIERNHKRKYNDRVGERLDALKRQSINPPVHSLAIHNSLHYSGLSVDAMADGQELRNVEGAHLSNSRQDDLDRTESPEPASNSSVITSVTSDAGSSEDIGSGYVEDSTKGVEAIINGRFGDTTYGESVKSTVASENEVLQDELHEQLEPNAVLGMVLDSKRQVRSNAVQKPVIRRLSVTSAV* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0943 701 PANTHER NUCLEAR POLY(A) POLYMERASE 4 2 578 - -
Apr10g0943 701 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Apr10g0943 701 CDD NT_PAP_TUTase 54 209 - -
Apr10g0943 701 PANTHER POLY A POLYMERASE 2 578 - -
Apr10g0943 701 MobiDBLite consensus disorder prediction 485 511 - -
Apr10g0943 701 Pfam Poly(A) polymerase predicted RNA binding domain 419 494 IPR007010 GO:0003723|GO:0043631
Apr10g0943 701 Pfam Poly(A) polymerase predicted RNA binding domain 362 420 IPR007010 GO:0003723|GO:0043631
Apr10g0943 701 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 358 - -
Apr10g0943 701 Gene3D Poly(A) polymerase predicted RNA binding domain 362 477 - -
Apr10g0943 701 Gene3D - 15 357 - -
Apr10g0943 701 MobiDBLite consensus disorder prediction 596 616 - -
Apr10g0943 701 MobiDBLite consensus disorder prediction 580 622 - -
Apr10g0943 701 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Apr10g0943 701 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Apr10g0943 701 SUPERFAMILY Nucleotidyltransferase 11 208 IPR043519 -
Apr10g0943 701 Pfam Nucleotidyltransferase domain 85 162 IPR002934 GO:0016779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0943 Apr-Chr10 21956009 21961418 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0943 K14376 - gmx:100783237 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0943 10 21956009 21961418 Apr10g0943 10 21956009 21961418 ECH