Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0927 ATGGAAAGTTCTGGAGGCCATCTTCCTTTCAGTTCTCAAAGTTTGGGAGATGGTGATAGTAACACGCTAATTTTGCCGGGCAAGAGGATGAAGAAAAGAAAAGGGATGGAACGGGTAGGGACAGTTGAACATGGCTATGAACATTGCAAAGTCCAATCAAATAAGAAACAGAAGCTGAGCAAGCCTCAGAAGAAGAAGCTCAAGAAGTTAGAGGATGACAAGGAGAAGCAACTTCTGTTGGCAAAAGCCATTAAGACAATGAATGAAAACACACTTCCGGACTATGCATATCCTCTTTTGCAGTCGTCGTGTAATATCAATCGGGATGAGACTATGAAGGAAAAACGTAGGAGAGCTGTACATATATTGAAAGAAGGATTGGAGGTTTCACTTGATGGGCCCTCTAAGAAACATGAGACAGAAGAGATTCATTTGTCCCCAGTTCATCAAGTTGAAGAAAAAGACATCATTCAAATTCCACCCGTTAGAACAGGAGTTCATGGCACTGAAGTTGTAAATTATAACTATGTTCCTAAACCTATTGCTGATATTTCCGTCGACAAGAAACCTGATGAAGTCAGAAGTTCTTCTCCCACGTCTTGTTCTATTGATGAAATAAGAAGCACCTTGTCAAAGGATAGGACAGATGGGAACCCTAACTCCAATGTCAATGAATTGAGTAACCTTCCAGATATTTCTTCCCTGAGGTCTTCAAATGTTCCTACTGTTGTGCATGTATACAGACCAACTGAGATTGAAGACAAAAGAAAGGATCTGCCGATAGTTATGATGGAGCAAGAGATAATGGAAGCTATAAATGACCATTCTAGTGTTATCATATGTGGAGAAACTGGGTGTGGTAAAACAACCCAAGTTCCTCAGTTTCTTTATGAAGCTGGCTATGGTTCAAGTAAGGGTATTATTGGTGTTACTCAACCACGTCGGGTGGCTGTTCTTGCCACTGCCAAGCGTGTGTCATATGAGCTTGGTCTTCACCTAGGAAAGGAGGTTGGTTTTCAGGTCAGATATGATAAGAGGATTGGAGAAAGTTGCTCTATCAAGTTTATGACTGATGGAATTTTGCTACGAGAAGTTCAGAATGATATTTTACTGAGGCGTTATTCTGTCATAATTCTTGATGAGGCTCATGAGAGGAGCTTGAACACAGACATTCTGATCGGAATGCTCTCACGAGTAATTAAAACTCGTCAAATGATTTATAATGAACAGCAGAAGATGATGCTTTCAGGGGAAAGTATAAGTCCTGAAAAACTGGTTTTTCCACTAAAACTTGTGCTTATGAGTGCCACCTTGCGAGTACAAGACTTTACTTCTGGAAGGTTATTTTGTACTCCTCCACCTGTGATAGAAGTTCCTACAAGGCAATTTCCAGTAACAGTATACTTCTCAAAGAAAACAGAGAAAACAGATTATATTGGAGAAGCATATAAGAAGGTCTTGGCAATTCACAAGAGGTTGCCACCTGGGGGCATACTTGTCTTTGTTACAGGACAAAGGGAAGTAGAGGACTTGTGCAGGAAGTTACGCAAAGCTTCAAGGGAGTTTATCAAGAAAAATGTTGAAGGGTCCATGGAAAGTGATAGTACTGCAGTCCATGAAACAAATTCTGTTGAAGGAATCAATATTAATGAGATCAATGAAGCATTTGAGGTTCATGGAAGCTCGTCCATTCAGCAAACTGATAGATTTAGTGGCTATGATGAAGATGAGAAAGATGTAAATGAGGATGAATCAGATTTTTCTTATGATTCAGAAGCAGAGAGTGAACTGGAATTCAATGATGATGATAATCTTCAGCATTTGGAGAACAAAAGTAATAATGTGGATATCTTAGGACAGGAAGGAAGTCTTGCTTCACTGAAGGCTGCCTTCGAAAAATTGTCTGGGCAAGCTCCATTAAGCTCCTCAAATGGGGAGCAGACATTTCCTATGAATACAGAAGGTAATTTAGACCAATCAAAAGTTTTCAGGGAGAAAAGAGCTAGAGAAAACTGCAGTCCTCCTGGTGCACTCTTTGTTCTGCCTCTGTATGCCATGCTTCCTGCAACAGCTCAACTTCGTGTATTTGAGGAAGTCAAGGAGGGAGAACGGCTTGTTGTCATTGCCACAAATGTTGCTGAAACATCTTTAACAATCCCAGGGATAAAGTATGTGGTTGATACTGGAAGAGAAAAGGTGAAAAATTATGACTCCTCTAATGGCATGGAAACATATGAAGTACAATGGATAAGTAAGGCATCTGCCGCTCAACGTGCAGGCAGAGCTGGAAGAACTGGACCTGGGCACTGTTATCGTCTCTATTCTTCTGCTGCCTTTAATAATGAATTTCCTGAGCACTCTCCTGCTGAAGTTGAGAAAGTACCTGTTCATGGTGTGGTCCTTCTCTTGAAATCCATGCATATTAAGAAGGTTGCAAACTTCCCATTTCCTACTTCTCTAAAAGCTGCTTCTCTGCTCGAGGCTGAGAATTGTTTGAAAGCTCTTGAAGCACTTGATAGCAAGGATGAACTTACTGTTTTGGGCAAAGCCATGGCACACTATCCCTTGAGTCCTCGTCATTCTAGAATGCTCCTCACCGTTATTAAAAATACAAGACACCAGCATAAATGTAATCAAAATCTGCTTTTGGCATATGCGGTTGCAGTTGCTGCAGCTTTGAGCTTGTCAAATCCTTTTATAATGCAATATGAAGATGATAGCAGCAGAGATTCAGAGATGTCTGAGAAATTTAGCATGGGTGACAGAGGGAAAGACATTGATAAAAAAGAGAAGTTGCGGAGAAAGAAACTAAAAGAAACTGCTAAAGTTGCAAGAGAAAAGTTTCGAGTTGTTACTAGTGATGCCCTAACCATAGCTTATGCTTTGCAATGTTTTGAACATTCACGAAAGTCAGTAGAATTCTGTGATGAAAATGCAGTGCATTTCAAAACAATGGATGAAATGTCCAAGCTTCGACAACAGCTACTCAAACTGGTCTTTTATCAGAGTGATAGAGGTGGTTTTGAAGAAGAGGACTCTTGGATTCATGGAAATTTAGAGGATGTAGAACATGCATGGCAGGTTTCTTCTAAAAAATATCCTCTTTCTCTGGTTGAGGAAAGGCTCATCTGTCAAGCAATATGTGCTGGTTGGGCAGATAGGGTTGCTAAACGCAGTACAGTTTCTTCTAGGGCCTCCAATGGAGAGAAACCTTTTCGTGCTGTTAGGTATCAATCATGCATGGTTGATGAAAGTGTTTTCCTTCATCGTTGGTCATCTGTTTCCATTGTAAGCCCTGAGTTTTTGGTTTACAATGAACTGTTAGAGACCAAAAGACCAAACAAACAAGGGATAACAAGTGCCAAGAGAGCATATATGCATGGAGTAACAAGTGTGGAGCCAGCTTGGCTAGTTGAACATGCAAAGTCTTCATGCATCTTCTCTCCTCCCCTGACGGATCCCAAACCTTATTATGATGCCCAGACTGACCAAGTAAAATGTTGGGTAATCCCAACCTTTGGACGTTTCTGTTGGGAGCTTCCAAAGCATTCATTGCTCATTAGCAATTATGAACATCGGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCATGTTTAAAATCTGTTCGAAAATGCATGTCAGCCCCTCCTGAAAGTATTATGAAGAGAGAAGCATTTGGTCAGAAAAGGGTGGGAAATCTTTTAAGCAAGTTAAATAGCAGGCTGATTGATAGCTCAGCTATGTTAAGAATAGTGTGGAAAGAGAATCCAAGGGAATTGTTTTCAGAAATTTTGGATTGGTTTCAGCAGAGTTTTCACAAACACTTTGAAAACTTATGGTTACAAATGCTTAATGAAGTGCTTATGGAAACACAAGAACGCCCTCTGCATAAAAGTATTAAAAAAAAGGGAAAATCTAAAGCCGTGCGATGA 3945 0.4048 MESSGGHLPFSSQSLGDGDSNTLILPGKRMKKRKGMERVGTVEHGYEHCKVQSNKKQKLSKPQKKKLKKLEDDKEKQLLLAKAIKTMNENTLPDYAYPLLQSSCNINRDETMKEKRRRAVHILKEGLEVSLDGPSKKHETEEIHLSPVHQVEEKDIIQIPPVRTGVHGTEVVNYNYVPKPIADISVDKKPDEVRSSSPTSCSIDEIRSTLSKDRTDGNPNSNVNELSNLPDISSLRSSNVPTVVHVYRPTEIEDKRKDLPIVMMEQEIMEAINDHSSVIICGETGCGKTTQVPQFLYEAGYGSSKGIIGVTQPRRVAVLATAKRVSYELGLHLGKEVGFQVRYDKRIGESCSIKFMTDGILLREVQNDILLRRYSVIILDEAHERSLNTDILIGMLSRVIKTRQMIYNEQQKMMLSGESISPEKLVFPLKLVLMSATLRVQDFTSGRLFCTPPPVIEVPTRQFPVTVYFSKKTEKTDYIGEAYKKVLAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFIKKNVEGSMESDSTAVHETNSVEGININEINEAFEVHGSSSIQQTDRFSGYDEDEKDVNEDESDFSYDSEAESELEFNDDDNLQHLENKSNNVDILGQEGSLASLKAAFEKLSGQAPLSSSNGEQTFPMNTEGNLDQSKVFREKRARENCSPPGALFVLPLYAMLPATAQLRVFEEVKEGERLVVIATNVAETSLTIPGIKYVVDTGREKVKNYDSSNGMETYEVQWISKASAAQRAGRAGRTGPGHCYRLYSSAAFNNEFPEHSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDELTVLGKAMAHYPLSPRHSRMLLTVIKNTRHQHKCNQNLLLAYAVAVAAALSLSNPFIMQYEDDSSRDSEMSEKFSMGDRGKDIDKKEKLRRKKLKETAKVAREKFRVVTSDALTIAYALQCFEHSRKSVEFCDENAVHFKTMDEMSKLRQQLLKLVFYQSDRGGFEEEDSWIHGNLEDVEHAWQVSSKKYPLSLVEERLICQAICAGWADRVAKRSTVSSRASNGEKPFRAVRYQSCMVDESVFLHRWSSVSIVSPEFLVYNELLETKRPNKQGITSAKRAYMHGVTSVEPAWLVEHAKSSCIFSPPLTDPKPYYDAQTDQVKCWVIPTFGRFCWELPKHSLLISNYEHRVQVFAYALLEGQVCPCLKSVRKCMSAPPESIMKREAFGQKRVGNLLSKLNSRLIDSSAMLRIVWKENPRELFSEILDWFQQSFHKHFENLWLQMLNEVLMETQERPLHKSIKKKGKSKAVR* 1315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0927 1314 MobiDBLite consensus disorder prediction 577 592 - -
Apr10g0927 1314 Pfam Helicase associated domain (HA2) 828 957 IPR007502 GO:0004386
Apr10g0927 1314 Pfam DEAD/DEAH box helicase 266 442 IPR011545 GO:0003676|GO:0005524
Apr10g0927 1314 SMART ultradead3 257 468 IPR014001 -
Apr10g0927 1314 MobiDBLite consensus disorder prediction 213 231 - -
Apr10g0927 1314 SMART ha2_5 827 959 IPR007502 GO:0004386
Apr10g0927 1314 PANTHER ATP-DEPENDENT RNA HELICASE 239 1297 - -
Apr10g0927 1314 PANTHER ATP-DEPENDENT RNA HELICASE 18 132 - -
Apr10g0927 1314 MobiDBLite consensus disorder prediction 558 592 - -
Apr10g0927 1314 Gene3D - 462 569 IPR027417 -
Apr10g0927 1314 Gene3D - 644 787 IPR027417 -
Apr10g0927 1314 SMART helicmild6 670 766 IPR001650 -
Apr10g0927 1314 MobiDBLite consensus disorder prediction 209 231 - -
Apr10g0927 1314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 872 IPR027417 -
Apr10g0927 1314 CDD DEXHc_DHX37 259 458 - -
Apr10g0927 1314 PANTHER - 18 132 - -
Apr10g0927 1314 PANTHER - 239 1297 - -
Apr10g0927 1314 Gene3D - 217 461 IPR027417 -
Apr10g0927 1314 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1043 1142 IPR011709 -
Apr10g0927 1314 MobiDBLite consensus disorder prediction 1 20 - -
Apr10g0927 1314 CDD SF2_C_RHA 680 774 - -
Apr10g0927 1314 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 456 IPR014001 -
Apr10g0927 1314 MobiDBLite consensus disorder prediction 1 70 - -
Apr10g0927 1314 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 626 807 IPR001650 -
Apr10g0927 1314 Pfam Helicase conserved C-terminal domain 658 766 IPR001650 -
Apr10g0927 1314 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 375 384 IPR002464 -
Apr10g0927 1314 MobiDBLite consensus disorder prediction 36 54 - -
Apr10g0927 1314 Gene3D - 817 936 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0927 Apr-Chr10 21808074 21815195 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0927 K14780 - gmx:100788201 2097.01