Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0562 ATGGAGAGAATGAAAATGTTGATGTTTTTTGTGATGGCGCTAATGTTTTGCAATGTTTCAGCTTCATCAAGGCTATTTAACGATCATGAGAGGCACAATAGGAGAAATCTTCTGGCCAATGGCCTTGGTGCCACTCCTCCAATGGGGTGGAACAGCTGGAATCATTTTAGAAGTGACGTAAACGAAACTCTTATCCGAGAAACAGCTGATGCACTTGTTTCTAGCGGTCTTTCCAAGGTTGGATACGTTTATGTCAACATAGATGATGGCTGGGGTGAAATAGCTCGTGATGGGGAGGGTAATATGGTAGCACACAAAACAAAATTTGCTTCCGGAATAAAAGCTCTTGCAGATTATGTTCACGGGAAGGGTCTTAAGCTTGGGATTTATTCAGATGCAGGGTATTTTACTTGTAGCAAAAAGATGCCCGGTTCACTTGGTCATGAAGAGCAAGATGCTAAGACTTTCGCATCGTGGGGAGTTGATTACTTGAAGTATGACAACTGTGACAATGATGGAATAAAGCCCACTGTTAGATACCCTATCATGACTCAAGCTTTGATGAAAGCAGGCCGTCCAATCTACTTCTCACTATGTGAATGGGGAGACATGCACCCTGCATTATGGGGTAATCCAGTGGGAAATAGCTGGAGAACATCTGATGACATTACAGACAAATGGGACAGTATGCTTTCAAAGGCAGACGTAAATGAAATTTATGCTGATTTTGCAAAACCTGGTGGTTGGAATGATCCTGACATGCTAGAGATAGGAAATGGAGGGATGAACAAATCTGAATATATTGTTCACTTCAGTTTATGGGCCATTTCCAAGGCTCCTCTTCTTATTGGCTGTGATGTTCGAAATATGACTGAAGAGACTAAAATGATATTATCAAATACTGAGGTTATTGCAGTTGACCAAGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGAACGAAGGCGCTCTTGAGGTTTGGGCAGGTCCTCTTACAGATTCCAGGGTTGCTGTAGTCCTACTTAATAAAGGTCGTCGTCGAAAGGCCATCACTGCTTTATGGGAAGATATTGGCATTCCACCTGCAAGTCTTGTTGAAGCAAGAGACCCTTGGGAGCACAAGACATTGGAAAGACACTTCGTGGGAAATTTGACTGCCACTGTTGAACCACATGCTTGTAAAATGTATGTGTTGAAGCCAATAGGTTGA 1209 0.4243 MERMKMLMFFVMALMFCNVSASSRLFNDHERHNRRNLLANGLGATPPMGWNSWNHFRSDVNETLIRETADALVSSGLSKVGYVYVNIDDGWGEIARDGEGNMVAHKTKFASGIKALADYVHGKGLKLGIYSDAGYFTCSKKMPGSLGHEEQDAKTFASWGVDYLKYDNCDNDGIKPTVRYPIMTQALMKAGRPIYFSLCEWGDMHPALWGNPVGNSWRTSDDITDKWDSMLSKADVNEIYADFAKPGGWNDPDMLEIGNGGMNKSEYIVHFSLWAISKAPLLIGCDVRNMTEETKMILSNTEVIAVDQDPLGVQGKKVRNEGALEVWAGPLTDSRVAVVLLNKGRRRKAITALWEDIGIPPASLVEARDPWEHKTLERHFVGNLTATVEPHACKMYVLKPIG* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0562 402 PRINTS Glycosyl hydrolase family 27 signature 40 59 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 PRINTS Glycosyl hydrolase family 27 signature 76 91 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 PRINTS Glycosyl hydrolase family 27 signature 117 138 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 PRINTS Glycosyl hydrolase family 27 signature 152 169 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 PRINTS Glycosyl hydrolase family 27 signature 179 197 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 PRINTS Glycosyl hydrolase family 27 signature 244 263 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 PRINTS Glycosyl hydrolase family 27 signature 265 286 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 Gene3D - 312 401 IPR013780 -
Apr10g0562 402 Pfam Alpha galactosidase C-terminal beta sandwich domain 321 398 IPR041233 -
Apr10g0562 402 ProSitePatterns Alpha-galactosidase signature. 81 97 IPR000111 GO:0004553|GO:0005975
Apr10g0562 402 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 4 401 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 Gene3D Aldolase class I 38 311 IPR013785 -
Apr10g0562 402 PANTHER ALPHA-GALACTOSIDASE 4 401 - -
Apr10g0562 402 Pfam Alpha galactosidase A 45 309 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 SUPERFAMILY Glycosyl hydrolase domain 304 398 - -
Apr10g0562 402 CDD GH27 46 309 IPR002241 GO:0004553|GO:0005975
Apr10g0562 402 SUPERFAMILY (Trans)glycosidases 38 310 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0562 Apr-Chr10 12734650 12737626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0562 35 398 Glycoside Hydrolase AT5G08370 63.736 1.45e-179 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0562 K07407 - gmx:100789787 682.559