Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0561 ATGGACACAACACACACAAACAGTGAATATGAAGATTGGGAAAATGATGATATGGCAAATTCTATCTTAAATTATGGGAGTGAAATGGGACACGTGGAGGAAAATGAATGGCAGATGGTGCAAAAGAAAGGAAACCAATTTGTGGTGAACGACCAACCTTTTTATGTTAATGGATTCAACACTTACTGGTTGATGGTATTCGCTGCGGATGAGTCTACCAGAGGAAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGCTGGTATGACAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATATCCATCAGCTTATGATGAAGTTGTATTCAAGGCCTTGGATTTTGTGGTAAGTGAAGCAAGGAAATACAAAATCAGGGTCATATTATCATTGGTCAACAACTGGGAAGCTTATGGTGGAAAACAACAGTATGTGAAGTGGGGCAATGCAGCTGGCCTTAATTTGACCTCAGATGATGACTTCTTCTCACATCCAACTCTAAGAGGCTACTACAAGGCTCATGTTAAGACGGTGCTAAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTCGCTTGGGAACTGATGAATGAGCCTCGATGCAACTCAGACCCGTCAGGTGATATCTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAAAGCATTGATCCAAAACACCTAGTGGAGATTGGACTAGAAGGATTTTATGGCCCCTCGACACCTCAGAGATTTCAGTTCAACCCAAATTCATATGCTCAACAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGCATTGACTTTGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAATTGCTGATTCCCATCTCCCATTTATAAAGTCTTGGATGGAAGCACACATAGAGGATGCTGAAAAGTATCTCGGAATGCCTGTGGTTTTTTCTGAGTTTGGTGTATCTGCAAAAGCTCCTGGCTACAATTCAACATATAGAGACACCCTTATAAACACCGTGTACAAGACCATCCTAAACTCTACAAAGAAAGGAGGAAGCGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGATGGAACGGATTACATGGATGATGGGTATGCAATTGTTCTCTCAAAATCACCTTCCACGTCAAGCATAATATCCCTTCAATCCACAAGGCTTGCCCTATTCAACTCCTTGTGCTCTAAGACATGCCGTTGGGGTTGTAAAAAGAAAAATGTGTTGGAAAAAGTACTCTATCACGATGAACTCTAA 1317 0.4153 MDTTHTNSEYEDWENDDMANSILNYGSEMGHVEENEWQMVQKKGNQFVVNDQPFYVNGFNTYWLMVFAADESTRGKVTEVFKHASSAGMTVCRTWAFNDGQWRALQKYPSAYDEVVFKALDFVVSEARKYKIRVILSLVNNWEAYGGKQQYVKWGNAAGLNLTSDDDFFSHPTLRGYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCNSDPSGDILQDWIKEMAFYVKSIDPKHLVEIGLEGFYGPSTPQRFQFNPNSYAQQVGTDFIRNHQVLGIDFASVHIYPDSWISQSIADSHLPFIKSWMEAHIEDAEKYLGMPVVFSEFGVSAKAPGYNSTYRDTLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSIISLQSTRLALFNSLCSKTCRWGCKKKNVLEKVLYHDEL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0561 438 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 9 438 - -
Apr10g0561 438 PANTHER - 9 438 IPR045053 GO:0004553
Apr10g0561 438 Gene3D Glycosidases 37 411 - -
Apr10g0561 438 Pfam Cellulase (glycosyl hydrolase family 5) 50 353 IPR001547 GO:0004553|GO:0071704
Apr10g0561 438 SUPERFAMILY (Trans)glycosidases 39 395 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0561 Apr-Chr10 12729630 12732697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0561 32 438 Glycoside Hydrolase AT5G01930 75.061 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0561 K19355 - gmx:100801139 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0561 10 12729630 12732697 Apr10g0561 10 12729630 12732697 ECH