Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0491 ATGGGAGACCAAATCAAAGAAGAAGAAGTGGTGGCTGAAGTGGAAGCTGTAGAAGCCGTATATGGAAGCGATTGCGTGGTTGTGCGTTCCTTCCCTCCCCATTTTCACATCTCTCTCAAACCCAGAACCGCAGATGTTTCCTCTCAACAGTTTGTAGAAGCTGTTCTGGAGATACGAGCAAGCCAACAGTATCCAAAAGAACCACCTCATCTCAATCTTGTGGATTGCAAGGGTCTGGATGAACTGAGACAGAAGCATTTATTAAATTATATACAAAGTAAAACCTACGAGCTTGCCCCTTGTTTAATGCTCGTAGCTCTCTGCGAGGAAGCAGTAGAGAAACTCTCAGCTATGAATCATCCTGATGGTGATTGTCCATTGTGTTTATTCCCTTTGGTCCCCGAAGATCAGCAAAGTGAAACCTTGCCTTTCATGAAGTTGATGTCTTGTTTTCATTGTTTTCACAGTGAATGTATCATTAGATGGTGGAATTGGCTTCAAAAGTCTAAAGAAACAGACTCTACCAATTCAGATAATGCAACTGTACGTCCTAACCAAGATAATCATAAAAAAATGGAAGAGAGTATCGGAAACTGCCCAGTCTGCCGCAAGCCTTTTCTTGCCAAGGATTTGGACCATGTACTTGACCTAGTCGGCTCGCATCCCTCCCAATTGAGCTTGGATAACGATGAAGCCAATGACGAGGAAAAGCTCCTTGAATCCAACTATGAGGTTGCAAGGAGACACAAGTTTGAAGCCATATTAAATTTACAGAAGGAGAACAGTGGTTTGATTGAACCCAAAAGAGATATAGTAATCTTGCCAGGTATGTATCTTGCACAACCAGTTGAAACGCCGAGCTCTACGTCGACCAAGGAACCTGATGAGCAGCAAGAAAAAGATCCACCTGCGGTCGTGTCAGGAAAACATGTCAGTGGGATGTCGAACGGACCTAGTTCTAGCAGGCAGAGGAATTTTGGTGCAAGGAGGCAGAAAGCAAGAAGTGATCACCACTCTACTTCAACTGTAAGAAATCCAAGAAAACCAGTTCAACAGTGGGTTAGAAGAGATAATCCTAGCAATAATCAATAA 1092 0.4322 MGDQIKEEEVVAEVEAVEAVYGSDCVVVRSFPPHFHISLKPRTADVSSQQFVEAVLEIRASQQYPKEPPHLNLVDCKGLDELRQKHLLNYIQSKTYELAPCLMLVALCEEAVEKLSAMNHPDGDCPLCLFPLVPEDQQSETLPFMKLMSCFHCFHSECIIRWWNWLQKSKETDSTNSDNATVRPNQDNHKKMEESIGNCPVCRKPFLAKDLDHVLDLVGSHPSQLSLDNDEANDEEKLLESNYEVARRHKFEAILNLQKENSGLIEPKRDIVILPGMYLAQPVETPSSTSTKEPDEQQEKDPPAVVSGKHVSGMSNGPSSSRQRNFGARRQKARSDHHSTSTVRNPRKPVQQWVRRDNPSNNQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0491 363 MobiDBLite consensus disorder prediction 171 191 - -
Apr10g0491 363 SUPERFAMILY UBC-like 7 115 IPR016135 -
Apr10g0491 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 217 IPR013083 -
Apr10g0491 363 PANTHER RING FINGER PROTEIN 25 6 346 IPR039133 GO:0061630
Apr10g0491 363 MobiDBLite consensus disorder prediction 312 326 - -
Apr10g0491 363 ProSiteProfiles RWD domain profile. 12 118 IPR006575 GO:0005515
Apr10g0491 363 SMART RWD2001b 12 118 IPR006575 GO:0005515
Apr10g0491 363 MobiDBLite consensus disorder prediction 344 363 - -
Apr10g0491 363 SUPERFAMILY RING/U-box 117 209 - -
Apr10g0491 363 SMART ring_2 125 202 IPR001841 -
Apr10g0491 363 MobiDBLite consensus disorder prediction 282 363 - -
Apr10g0491 363 Coils Coil 229 249 - -
Apr10g0491 363 MobiDBLite consensus disorder prediction 329 343 - -
Apr10g0491 363 Gene3D Ubiquitin Conjugating Enzyme 3 120 IPR016135 -
Apr10g0491 363 Pfam RWD domain 8 114 IPR006575 GO:0005515
Apr10g0491 363 ProSiteProfiles Zinc finger RING-type profile. 125 203 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0491 K10640 - gmx:100791789 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0491 10 11901137 11906503 Apr10g0491 10 11901137 11906503 ECH