Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g0490 | ATGAAAAGGCTAAACATAAACCCTATCTTATCCCCCATTCCCATTCGTGGAAGAAGTAACTGTGGAGTTATGGGAATTCTTACGTTGCCACTAGTGGTCTTCTCCGTTCTCAGACCAAACACCACCACTCGCCTCCGCCCCTCACACTCACTCCTCCGCCACCGCCGCCAATTCACCACCGCCGTCTCCGCAACCACCACTCCTTCTCCTTCTCTCTCACACCACTCTTCTTCTTCTTCTTCTTCTGACCGCTCCGACACTCGTTCTCTAAATTCGTCAATCCTCACCTTTCAGCAAGCCATTCAGCGTCTTCAGGAATATTGGGCTTCCGTGGGATGTTCCATAATGCAATGCAGCAACACAGAGGTTGGAGCTGGTACTATGAATCCTCTTACGTATTTAAGGGTGCTTGGTCCTGAACCGTGGAATGTTGCGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGATACGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAATTTCAGGTGATATTGAAGCCGGATCCTGGAAATTCACAGGATCTATTTATCCAGAGTCTTTCTGCTTTAGGTATTGATGTTAATGCACATGATATACGATTTGTGGAGGACAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTAGGCTGGGAAATCTGGATGGATGGGATGGAGATTACTCAATTCACCTACTTTCAGCAGGCTGGAAGTATACAGTTATCACCAGTGTCTGTAGAAATTACTTATGGCCTTGAGCGTATCCTCATGTTATTGCAGGGAGTTGATCACTTCAAGAAGATCAAATATTCTGATGGAATTACATATGGAGAGCTGTTCTTGGAGAATGAAAAGGAAATGAGTGCATATTACTTGGAGCATGCTAGTGTTGATCATGTTCAAAAACATTTTGATTTCTTTGAGGATGAAGCTCGTTGCTTACTTTCTTCAGGCCTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATCTTAGACTCCAGGGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGTCGCATGCGCAGTTTGGCTCGCCAGTGTGCACAACTTTGGTTGAAGACTAGGGAGATGCTTGGCTTTCCCCTTGGTTTTATCTCTGAACTAGATCATTTTGTATTGCCAAAAGAAATTCTGGAGGCTGCATGTGAGAAGGTGCATGATCATTCAAGAGCATTTGTTCTTGAAATTGGAATTGAAGAGATGCCACCTCAAGATGTTGTTGATGCAAGCAAGCAACTGGAAGATTTAATGCTGCAACTACTTGAACAGCAGAGATTAAAGCACGGTGAAGTGCAAGTTTTTGGCACCCCACGTAGATTAGTGGTTGCTGTTGAAAATCTTTTTACAAAACAAGCAGAAAAAGAGGTTGAAGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCATGAAGGAAATCCAACAAAGGCCATTGAGGGTTTTTCTCGTAGATATTCTGTTCCACTGGACTTGGTATACAGAAAGGTTGATGGGAAAACAGAATATGTTTATGCTCATATAAAGGAGTCTTCAAGACATGCTTTGGAGGTGTTGTCCAAAGAATTGCCTGCAATTATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAACTCTCAGGTGATGTTTAGCAGGCCCATCCGTTGGATTCTGGCCCTGCATGGAGACGTAGTAGTCCCATTTGTGTATGCTGGGGTGACGAGTGGAAAATTGTCTTGTGGTCTTCGCAATACTCCTTCAGCTATTGTCCAGGTGGAAAATGCAGAATTTTATTCAGCTGCAATAAAAAATGCGGGTATCAATGTTTCTGTTGAGGATCGTAAGAAAATAATTTTTGAGCAATCCAATGCATTAGCAGAAAGTGTAAAAGGCCAAATTCTTATTCCAAGAGGTTTGCTTGACGAGGTTGCAAATCTTGTTGAGGCACCTATTCCTGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAAGATCTTTTGACTATGGTTATGCAAAAGCACCAAAAGTATTTTGCTGTATGTGATGCTAATGGACGATTGCTGCCATATTTTATTGCTGTTGCAAATGGAGCAATTGATGAGACTATAGTGAGGAAAGGAAACGAAGCTGTGCTCAGGGCTCGTTATGAAGATGCCAAGTTCTTTTATGAAATGGACACTCGTAAAAGGTTTTCAGAATTCCGAAATCAACTGAAAAATATTCTCTTTCATGAAAAACTTGGAACCATGCTGGATAAGATGACTCGTGTTGAAAACATGGTTACTAAGTTAAGTTGCCTCCTGGATATCAATGAAGATGTGCAACACATTATCCGGGATGCTGCCTCACTTGCTATGTCTGATCTTGCCTCTGCAGTTGTCACTGAATTTACCTCACTTTCAGGAATTATGGGGCGTCACTATGCCCTCAGAGATGGATACTCAGAGCAGATTGCAGATGCCTTGCTTGAGATCACACTTCCTAGATTTTCTGGGGACATGCTTCCCGAAAGTGATGCTGGAATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTAGTTACTGCTGGTTGTCAACCTAGTTCCACAAATGATCCATTTGGTTTACGAAGAATCTCATATGGTCTTGTGCAACTATTGGTGGAAAAGAATAAAAATCTAGATTTTAAAGAGGCACTGGAACTTGCTGCAAATGTCCAGCCCATTAAAGTAGATCCTCATGTAATAAATGATGTTCATCAATTTGTTACTCGAAGATTAGAGCAATTTCTGGTTGACAAGGGGTTGAGTGCAGAATTTGTTCGTTCCATCCTTGCAGAGAGAGCAAATTTTCCTTGTCTAGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAGAGGGAAGCTTTTTCCTAAAGTAGTTGAAGCATACTCTCGGCCAACAAGAATTGTCCGAGGGAAGGAAGATGAACTTCATATGGAGGTGGATGAGGCTGCTTTTGAGACAAATGAAGAGAGAGTTTTATGGAGCACATTTTTGGCAGTTGAAAAGAGTATCAATCCTGGTCTTGACATCAACGATTTTGTTGAAATTTCATCTCAGCTAATACAGCCGCTTGAGGATTTCTTTAACAATGTCTTCGTAATGGTGGATGATGACAAGATCAGAGTAAACAGGTTGACTCTGCTAAAAGGAATTGCCGAACTTCCTAGAGGAATAGCAGACCTTTCTGTTCTACCAGGATTTTAA | 3276 | 0.4191 | MKRLNINPILSPIPIRGRSNCGVMGILTLPLVVFSVLRPNTTTRLRPSHSLLRHRRQFTTAVSATTTPSPSLSHHSSSSSSSDRSDTRSLNSSILTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVNAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSIQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEDEARCLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISELDHFVLPKEILEAACEKVHDHSRAFVLEIGIEEMPPQDVVDASKQLEDLMLQLLEQQRLKHGEVQVFGTPRRLVVAVENLFTKQAEKEVEVRGPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRKVDGKTEYVYAHIKESSRHALEVLSKELPAIIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFVYAGVTSGKLSCGLRNTPSAIVQVENAEFYSAAIKNAGINVSVEDRKKIIFEQSNALAESVKGQILIPRGLLDEVANLVEAPIPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGRLLPYFIAVANGAIDETIVRKGNEAVLRARYEDAKFFYEMDTRKRFSEFRNQLKNILFHEKLGTMLDKMTRVENMVTKLSCLLDINEDVQHIIRDAASLAMSDLASAVVTEFTSLSGIMGRHYALRDGYSEQIADALLEITLPRFSGDMLPESDAGIVLAIADRLDSLVGLVTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKEALELAANVQPIKVDPHVINDVHQFVTRRLEQFLVDKGLSAEFVRSILAERANFPCLAAKSAYKMEELSRGKLFPKVVEAYSRPTRIVRGKEDELHMEVDEAAFETNEERVLWSTFLAVEKSINPGLDINDFVEISSQLIQPLEDFFNNVFVMVDDDKIRVNRLTLLKGIAELPRGIADLSVLPGF* | 1092 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g0490 | 1091 | Gene3D | Bira Bifunctional Protein; Domain 2 | 82 | 298 | IPR045864 | - | |
| Apr10g0490 | 1091 | SUPERFAMILY | HD-domain/PDEase-like | 737 | 869 | - | - | |
| Apr10g0490 | 1091 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 149 | 164 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 170 | 190 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 201 | 225 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 227 | 247 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 250 | 265 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 335 | 351 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | CDD | GlyRS_alpha_core | 96 | 374 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 96 | 370 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 299 | 378 | - | - | |
| Apr10g0490 | 1091 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 407 | 1088 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | SUPERFAMILY | Class II aaRS and biotin synthetases | 96 | 374 | IPR045864 | - | |
| Apr10g0490 | 1091 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 764 | 1053 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | MobiDBLite | consensus disorder prediction | 62 | 88 | - | - | |
| Apr10g0490 | 1091 | Pfam | Glycyl-tRNA synthetase beta subunit | 410 | 954 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | PANTHER | GLYCYL-TRNA SYNTHETASE | 406 | 1091 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | TIGRFAM | glyQ: glycine--tRNA ligase, alpha subunit | 96 | 380 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 95 | 375 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | TIGRFAM | glyS: glycine--tRNA ligase, beta subunit | 407 | 1088 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Apr10g0490 | 1091 | Pfam | Glycyl-tRNA synthetase alpha subunit | 97 | 374 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g0490 | K14164 | - | gmx:100787365 | 1858.19 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Apr10g0490 | 10 | 11859059 | 11898415 | Apr10g0490 | 10 | 11859059 | 11898415 | ECH |