Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0254 ATGAATACTGAAACGCCAAAAAGGACTTCTAGTCCAAACTGGCACACCTCTTACGTCAAAACCAATATTTTTAATAACTTAAATCCCATATGCCAAGCCAACCAACAGTTAATTCTCAAGGGGAAGTTCGTGATCATCCACAACCATACCAAATCAATACCTGGAAAATTAATTTCTGTTCAGATTTATAGTGGGACAGATGAGGATCCTGATACAGGTAAAGGGATGTTGAGCGGAAAAGCAAAATTCAAACAATGTGAGAGCATAAAACATAACCATGATGCACCAACAACCATATATAAAATTAAAATACATGTTGGCTCACACTTTGGAACTCCAAGAGCTTTTGTGATTCAAAGCCAACACAATAAGAAATTCTTCCTTCAGTCTGCATCTATTGAGACTTCTAACAACCGCATCATTCACTTTGATTGCAATTCTTGGGTATATCCAATCAAGAAGACCAAATCTGACAGACTCTTCTTCTCAAATAGATGCTATCTTCCAAGTCAGACGCCAAGAGCACTAGTGGAACTAAGAAAGGAAGAGCTGGATAGATTGAGAGGAAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATATATGACTATGACTTGTATAATGACCTTGGTGATCCTGACAAAGGTCCAGAGCACCTTAGACCAATCCTTGGTGGCTCAAGGTTGTATCCATATCCACGTAGAGGAAGAACAGGTCGAAAACATAGTATAGCAGGTCCATCGAGTGAGAGCAGGCCACAACCAATGAGCTTTGACATGTATGTTCCATCAGATGAGAGATTTAGCCCCAATAAATTGAAGGAGCTGAAATCATATTGTGTCCATGCTATGGTACATTTTCTATCAACAAAGGCAGAATTAATACCACAACGAAGTTCCGCAAGTGTTCAATCATTCGAAGAGATATTTGACATGTTCTCTGGAAATAAGAACCAAACAATAGAGGGATGGATGAAAGAGAACTTAAAGAAAGTGATACCGATAGATCACTTTAAGGAGATAACTCGTGCGATCAAGGAAAACCATGAGCAACTACCTTTTCCTCAAATCATTGCTGAAAATGAATGGGCTTGGAAAGATGACATGGAATTTGGACGACAAATGCTTGCAGGAACTCATCCTGTCAGAATCCAGTGCTTAAAGAAATTCCCACCTAGAAACAAATTTGGAGTACGGAGTTCAATAAAACAATCAATCATAGAACAGAAGCTGGAAGGATGGACACTTTCTCAGGCAGTGGAACAGAGAAGAATATTCATTCTGGACCACCATGACTATCTCATTCCATATTTGAACAGAATAAATGCAAATGGAGTATGTGCTTATGCATCCAGGACTCTATTTTTCTTAAGGAGTGATGGCATGCTTAAGCCATTGGCTATAGAACTTAGCTTGCCAGGTCCATCTCCACACCTTGAATTCCATAGAGTTATTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTCGCAAAAACTCATGTTTTAGCTAATGATGCTGTTTACCATCAATTAATGAGTCACTGGTTATACACCCATGCAGTTGTTGAACCATTTATCATTGCCACCAAAAGAAGGCTAAGTGTTATGCATCCAATCCATCGGTTATTGAACCCTCATTTCAAAGACACAATGCACATAAATGCCTTGGCACGACTTTACCTTTTAAACTCAGGAGGAATTCTGGAGAGAATATTATTCCCTGGTGAAATCTGTATGCAGATATCTTGTGACCTTTATAAAGAGTGGAGATTCGATGAACAAGGACTTCCTGCTGATCTACTCAAAAGGGGCATGGCTGTGGAAGATCCAGACATAAATAACCCCACTGGGATTCAGCTTATGGTGTTGGACTATCCCTATGCCACTGATGGACTTGAAATATGGGTTGCCATCAAAGAATGGGTGATGGACTTTTGCTCATTCTTCTACGAGGATGATGAGGCCATTGAGGCTGATATAGAACTCCAAGCATGGTGGTCAGAAATTAGAACTCAAGGCCATGGTGACAAACACAATGACACATGTTGGTACGAAATGACAAAACTCTCACACCTTGTAGAAACATTAACAACCCTCATATGGGTTGCTTCTGCTAGACATGCATCCTTAAACTATGGCCAATATGCATACAATGGTTACCCTCCAAACCGTCCCACACTATGTAGGAAATTTGTTCCACTAGAAGGGACAGTTGAGTTTGGTGAATTTCTCAAGGACCCAGATAAGTTTTTCCTTAAGATGCTACCTGATAGGTTTGAGATGAGTCTTGCAGTAGCATTGGTTGATGTGCTCTCAAGGCACACTTGTGAAGAAGTGTATTTGGGGTGCCACCAATCACCAGGGTGGATAGACAATGAAGTAATTCTGAACAGGTTTGCTGAGTTCAAACAAGATCTCAAGGAAATTGAGACAAGGATCATGCAAAGGAATAGAGATCCGAAGCTTAAGAATAGGCGTGGCCCAGCAAACATTGAGTACACTCTTTTGTACCCTGATACATCTACTTCTTCTAACTCAAGAAGTGGAATCACAGGTAGAGGAATACCTAATAGCATATCAATTTGA 2595 0.4039 MNTETPKRTSSPNWHTSYVKTNIFNNLNPICQANQQLILKGKFVIIHNHTKSIPGKLISVQIYSGTDEDPDTGKGMLSGKAKFKQCESIKHNHDAPTTIYKIKIHVGSHFGTPRAFVIQSQHNKKFFLQSASIETSNNRIIHFDCNSWVYPIKKTKSDRLFFSNRCYLPSQTPRALVELRKEELDRLRGNGMGERKEWDRIYDYDLYNDLGDPDKGPEHLRPILGGSRLYPYPRRGRTGRKHSIAGPSSESRPQPMSFDMYVPSDERFSPNKLKELKSYCVHAMVHFLSTKAELIPQRSSASVQSFEEIFDMFSGNKNQTIEGWMKENLKKVIPIDHFKEITRAIKENHEQLPFPQIIAENEWAWKDDMEFGRQMLAGTHPVRIQCLKKFPPRNKFGVRSSIKQSIIEQKLEGWTLSQAVEQRRIFILDHHDYLIPYLNRINANGVCAYASRTLFFLRSDGMLKPLAIELSLPGPSPHLEFHRVILPAKQGTQAALWQLAKTHVLANDAVYHQLMSHWLYTHAVVEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLYLLNSGGILERILFPGEICMQISCDLYKEWRFDEQGLPADLLKRGMAVEDPDINNPTGIQLMVLDYPYATDGLEIWVAIKEWVMDFCSFFYEDDEAIEADIELQAWWSEIRTQGHGDKHNDTCWYEMTKLSHLVETLTTLIWVASARHASLNYGQYAYNGYPPNRPTLCRKFVPLEGTVEFGEFLKDPDKFFLKMLPDRFEMSLAVALVDVLSRHTCEEVYLGCHQSPGWIDNEVILNRFAEFKQDLKEIETRIMQRNRDPKLKNRRGPANIEYTLLYPDTSTSSNSRSGITGRGIPNSISI* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0254 864 Gene3D PLAT/LH2 domain 16 167 - -
Apr10g0254 864 PANTHER LIPOXYGENASE 94 862 IPR000907 GO:0016702|GO:0046872
Apr10g0254 864 ProSitePatterns Lipoxygenases iron-binding region signature 2. 539 549 IPR020834 GO:0016702|GO:0046872
Apr10g0254 864 Gene3D - 272 362 IPR027433 -
Apr10g0254 864 PRINTS Plant lipoxygenase signature 133 151 IPR001246 GO:0016491
Apr10g0254 864 PRINTS Plant lipoxygenase signature 159 180 IPR001246 GO:0016491
Apr10g0254 864 PRINTS Plant lipoxygenase signature 198 214 IPR001246 GO:0016491
Apr10g0254 864 PRINTS Plant lipoxygenase signature 231 250 IPR001246 GO:0016491
Apr10g0254 864 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Apr10g0254 864 PRINTS Plant lipoxygenase signature 449 473 IPR001246 GO:0016491
Apr10g0254 864 PRINTS Plant lipoxygenase signature 771 785 IPR001246 GO:0016491
Apr10g0254 864 ProSiteProfiles PLAT domain profile. 39 163 IPR001024 GO:0005515
Apr10g0254 864 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 48 167 IPR036392 GO:0005515
Apr10g0254 864 SMART LH2_4 37 164 IPR001024 GO:0005515
Apr10g0254 864 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 166 864 IPR013819 GO:0016702|GO:0046872
Apr10g0254 864 MobiDBLite consensus disorder prediction 231 257 - -
Apr10g0254 864 Pfam Lipoxygenase 176 841 IPR013819 GO:0016702|GO:0046872
Apr10g0254 864 Gene3D - 168 270 - -
Apr10g0254 864 Gene3D - 363 489 - -
Apr10g0254 864 PANTHER LIPOXYGENASE 94 862 - -
Apr10g0254 864 Gene3D - 490 863 - -
Apr10g0254 864 PRINTS Lipoxygenase signature 494 511 IPR013819 GO:0016702|GO:0046872
Apr10g0254 864 PRINTS Lipoxygenase signature 512 529 IPR013819 GO:0016702|GO:0046872
Apr10g0254 864 PRINTS Lipoxygenase signature 532 552 IPR013819 GO:0016702|GO:0046872
Apr10g0254 864 SUPERFAMILY Lipoxigenase 168 864 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0254 Apr-Chr10 6132700 6142074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0254 55 864 Acyl Lipid Metabolism Gene Families AT3G22400 46.796 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0254 K00454 - gmx:100797946 1531.92