Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0208 ATGAAGGGTGGAGGGAAGAGAAAGGCAACCTCGGAGACTCCGAACGATGCTTCTGTTTCTTCTGATGCTGTGGGTTTGGGTGGTGAAGGTGGGGGTTCCCAAGTTGTGAACTTTGAGGAAAACGAGGGTACCCAGTTGCCGAAAGAGGGAGCTGAGGAACCCCATGCAGAGGATTCTGAAGGAGAGGGTGCGGATGAGGGAGAAGAAGGTGAAGAAGAGGAAGATGAAGAGGAAGAAGAGGAAGAGGATGGAGAAGAGGAAAATGGTGGCGGCGATGGTGATGCTCCTGCTGCTGTGCCTCAAGAGGGTGGACAAGGTCTTATTCTTGGTGATGGATTCTATGAAGTTGAAGCTATTCGTCGTAAGAGAGTCCGAAAGGGTCAGCTGCAGTACTTTATCAAATGGCGTGGGTGGCCTGAGACAGCCAACACTTGGGAGCCCCCTGAAAATCTAGAGTCTGTTCCTGATGTTGTTGAAGCCTTCGAGGAGAGCTTGAGATCGGGAAAGCATCGTAGGCGCAGACGCAAGCATGTGGTGCATCATACTCAACCCAAGAAGCGGCTGGAGCGTTCTACTACTCCCTACAGCCTAAGACGTTTTTCGACTAGTACAGCTGAGAATCATACTCAGCCTGCTCCTCTTAATGATCTTAGTATTTCTGATATTCCTGCCTTTCCTCAGACTGTGATTTTTGCTGATGAGGTGGAAACTAATGGTGATGCCGGCAATCTTGGACAAGCCAAGCATGCTAATGATAATAGGTCTGCAAATGCTTCAGAGCAAAATGTTGAAAGGAATGAGGAAAATGATTATGATCCTAAGCTTAGTGAACTTCGGGCTACAACTACCAATGGGTATGATACGGACAAGCTTGCCATACAGTTTCAAGAAGCTAGGATTTCATCAGGCAATATTCGTCAAGTGGATGGTCAATCGAAGGGGGTTTCTGAGGAACCACCTCAAAGTGGCCGTTGCAGGGGAGCCAAAAGGAGAAAATCTGGTTCTGTGAAGAGGTTTAAAAAAGATTCATATACTGGTGAGGAGCCTGTTAATGCACAAAGACCAATTGGCATGCCTGTTGGAACAGCTGAGCCAGCAGGAACAGGGATTGCTGACAATGGAGGTAATAATAGTCGTTACAAGACAGATCATGCTAGGCCTGCCAGCAACATTGTGAAGATTATAAGGCCAGTAGGCTATTCAGCTTCAGTATCCAGTGGTACGCAGGATGTTTTGGTGACCTTTGTGGCTATGAGGTCTGATGGAACAGAAGTGATGGTTGACAACAAGTATCTCAAGGCTTACAATCCGATACTGCTGATCAATTTCTATGAGCAGCACCTTCGCTACAGCCCCACATCGTGA 1365 0.4755 MKGGGKRKATSETPNDASVSSDAVGLGGEGGGSQVVNFEENEGTQLPKEGAEEPHAEDSEGEGADEGEEGEEEEDEEEEEEEDGEEENGGGDGDAPAAVPQEGGQGLILGDGFYEVEAIRRKRVRKGQLQYFIKWRGWPETANTWEPPENLESVPDVVEAFEESLRSGKHRRRRRKHVVHHTQPKKRLERSTTPYSLRRFSTSTAENHTQPAPLNDLSISDIPAFPQTVIFADEVETNGDAGNLGQAKHANDNRSANASEQNVERNEENDYDPKLSELRATTTNGYDTDKLAIQFQEARISSGNIRQVDGQSKGVSEEPPQSGRCRGAKRRKSGSVKRFKKDSYTGEEPVNAQRPIGMPVGTAEPAGTGIADNGGNNSRYKTDHARPASNIVKIIRPVGYSASVSSGTQDVLVTFVAMRSDGTEVMVDNKYLKAYNPILLINFYEQHLRYSPTS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0208 454 MobiDBLite consensus disorder prediction 58 90 - -
Apr10g0208 454 CDD CD_CSD 114 163 - -
Apr10g0208 454 PRINTS Chromodomain signature 111 119 IPR017984 -
Apr10g0208 454 PRINTS Chromodomain signature 124 138 IPR017984 -
Apr10g0208 454 PRINTS Chromodomain signature 139 151 IPR017984 -
Apr10g0208 454 MobiDBLite consensus disorder prediction 168 184 - -
Apr10g0208 454 MobiDBLite consensus disorder prediction 303 318 - -
Apr10g0208 454 ProSiteProfiles Chromo and chromo shadow domain profile. 114 173 IPR000953 -
Apr10g0208 454 ProSitePatterns Chromo domain signature. 131 151 IPR023779 -
Apr10g0208 454 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 453 - -
Apr10g0208 454 MobiDBLite consensus disorder prediction 1 107 - -
Apr10g0208 454 SUPERFAMILY Chromo domain-like 103 171 IPR016197 -
Apr10g0208 454 SMART chromo_7 113 166 IPR000953 -
Apr10g0208 454 SMART ChS_2 375 453 IPR008251 GO:0005634
Apr10g0208 454 Coils Coil 67 87 - -
Apr10g0208 454 Pfam Chromo (CHRromatin Organisation MOdifier) domain 114 163 IPR023780 -
Apr10g0208 454 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 453 IPR044251 GO:0006325|GO:0031507
Apr10g0208 454 Gene3D - 63 174 - -
Apr10g0208 454 MobiDBLite consensus disorder prediction 303 358 - -
Apr10g0208 454 MobiDBLite consensus disorder prediction 261 275 - -
Apr10g0208 454 MobiDBLite consensus disorder prediction 165 196 - -
Apr10g0208 454 MobiDBLite consensus disorder prediction 240 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0208 Apr-Chr10 4839866 4850504 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0208 - - aprc:113849713 822.002