Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0173 ATGGCACAACTAAGGCTAACTAACAACTATTTTGCACTTTTTGTTGTGCATGCTTTTGTATTCTTTCTCTTTACACATAGATCAACCGCGGTTGTAGGAGTAACTTTCAATGTTGTCAATTTTGGGGCGAAACCCGATGGAGAAACTGACTCCACAAATGCATTCCTCACAGCATGGGGTAGAGCATGTAGCTCAACAACACCATGTACCATTTATGTGCCACTAGGAAGGTTCTCAGTTGGTAATGTAGTGTTTAAGGGGCCATGCAAGAATCAAGGCATCACAATACGCATTGATGGAGCACTAGTTGCACCTTCCAATTATGATGTTATTGGAAATGATGGAAATTGGTTGCTTTTTGATGATGTTAATGGAGTTTCAGTCATTGGTGGTGTTCTTGATGGCCAAGGCACAAGTCTTTGGGCTTGTAAGAGATCTGGCAAGACTTGCCCAATTGGTGCTACGAACTTGGGATTTACCAATTCCAACAACATTGTTATCAACGGGGTGACCTCTTTCAATAGCCAAATATTCCACATAGTTATAGACCGTTGCCATAATGTCAAAGTACAAAGTGTTAAGGTATCAGCTGCTGGAAACAGTCCTAACACTGATGGAATTCATATTCAACTCTCATCAAGTGTCACCATCCTTAGCTCCAACATAGCAACCGGGGATGATTGCATCTCAATTGGTCCTGGAACAACTAATTTGTGGATAGAAAACATTGCTTGTGGACCAGGTCATGGAATCAGTGTTGGAAGTTTAGGGAAGGAAATTCAAGAACCTGGTGTGCAAAATGTGACTGTTAAAACAGTCACGTTTACAGGAACTGAAAATGGTGTACGAATTAAGTCTTGGGGGAGACCTAGTAATGGGTTCGCAAGGGACATCCTTTTCCAACATGTTACCATGATTAATGTCCAAAATCCCATTGTGATTGACCAAAATTACTGCCCCAACGAGAAGGATTGTCCTGGTCAGGTTTCTGGGGTTGAAATTAACAATGTTACATACCAAGATATTCATGGAAGCTCAGCTACAGAAGTTGCAGTAAAATTGAATTGTAGTCCAAAGTATCCATGCTCTGGAATAAGTTTGGAAGATGTGATGCTTACATATGAAAACAAACAAACCCAAGCTTCATGCAATCACGCTGGAGGAATCACTTCTGGTCTAGTTCAACCCAGCAATTGCTTCTAA 1203 0.4106 MAQLRLTNNYFALFVVHAFVFFLFTHRSTAVVGVTFNVVNFGAKPDGETDSTNAFLTAWGRACSSTTPCTIYVPLGRFSVGNVVFKGPCKNQGITIRIDGALVAPSNYDVIGNDGNWLLFDDVNGVSVIGGVLDGQGTSLWACKRSGKTCPIGATNLGFTNSNNIVINGVTSFNSQIFHIVIDRCHNVKVQSVKVSAAGNSPNTDGIHIQLSSSVTILSSNIATGDDCISIGPGTTNLWIENIACGPGHGISVGSLGKEIQEPGVQNVTVKTVTFTGTENGVRIKSWGRPSNGFARDILFQHVTMINVQNPIVIDQNYCPNEKDCPGQVSGVEINNVTYQDIHGSSATEVAVKLNCSPKYPCSGISLEDVMLTYENKQTQASCNHAGGITSGLVQPSNCF* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0173 400 Gene3D - 23 399 IPR012334 -
Apr10g0173 400 ProSitePatterns Polygalacturonase active site. 242 255 IPR000743 GO:0004650|GO:0005975
Apr10g0173 400 Pfam Glycosyl hydrolases family 28 63 385 IPR000743 GO:0004650|GO:0005975
Apr10g0173 400 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 14 399 - -
Apr10g0173 400 PANTHER - 14 399 - -
Apr10g0173 400 SUPERFAMILY Pectin lyase-like 20 400 IPR011050 -
Apr10g0173 400 SMART pbh1 295 316 IPR006626 -
Apr10g0173 400 SMART pbh1 265 286 IPR006626 -
Apr10g0173 400 SMART pbh1 212 233 IPR006626 -
Apr10g0173 400 SMART pbh1 235 255 IPR006626 -
Apr10g0173 400 SMART pbh1 329 369 IPR006626 -
Apr10g0173 400 SMART pbh1 185 211 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0173 Apr-Chr10 4165077 4167345 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0173 19 400 Glycoside Hydrolase AT2G43870 62.663 5.25e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0173 K01184 - gmx:100784002 696.812