Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0129 ATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGCTGCGAAATGCGCGATTCCCGATGATGATGGAGACTTTGCTAGCAAGAAGATCGAGTGTTGTTCGAGTGGGAGGGGCAAGTTGGTCACTGGTTTCGAAAACGGCACCGTTTGCTTCTTCGATCGAGGCCTTAAGTTCAATTACGCTTTTCAACCTCACTCCTCTTCTGTTCGATTTCTTCAGCACCTCAAGCAACGCAACTTCCTGGTAACTATTGGGGAAGATGAGCAGCTTACTCCCCAGCAATCAGCTTTGTGCCTCAAGGTTTTTGACCTTGATAAGATGCAGCCTGAGAGTTCTAGCACGACGAGTCCTGATTGTGTTGGGATATTGCGTATATTCACAAATCAGTTTCCTGAGGCAAAGATTACATCTTTTTTAGTCTTAGAAGAAGTACCGCCTATACTACTCATAGCTATTGGCCTAGACAATGGTTCTATTTACTGCATTAAAGGAGACATTGCACGGGAGCGTATCACTCGGTTCAAGCTTCAAGTGGAAAACCATTCGGACAAAACTCTTTCCCCCATAACCGGTCTTGGGTTTAGGGTGGATGGTCAATCTCTACAGTTATTTGCTGCAACTCCAAGTTCAGTGAGCTTGTTCTCATTGCATGATCAACCACCAAGAAGGCAAACCCTTGATCAGATTGGATGTGGTGTAAACAGCGTTGCAATGAGTGACCGCTCTGAGTTGATAATTGGTCGATCAGAGGCAGTATATTTTTATGAAGTTGATGGACGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTAGGATGGTTCCGTGGATACCTTTTGTGTGTCATTGCAGATCAAAGAACAGGAAAGCATACTTTTAACATCTATGATCTGAAGAATCGATTAATAGCCCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTTTATGAATGGGGTAACATCATTCTCATAATGACTGATAAATCAGCTTTATGCATTGGAGAAAAAGATATGGAAAGCAAGTTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTCGTACAGACTCAGCAAGCAGATGCTGCAGCTACTGCTGAAGTGCTAAGAAAATACGGGGATCATTTGTATAGCAAGCAAGACTATGATGAGGCAATGGCCCAGTACATACATACTATAGGTCATCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAGAGGATCTACAACCTCACAAATTATTTGGAAAAGTTGCATGAGAAGGGTCTTGCTTCTAAAGATCACACAACACTTTTATTAAACTGTTATACCAAATTGAAAGATGTTGAAAAGTTAAATCTATTTATTAAAAGCGATGACAGCATTGGGGAACTTAAGTTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAGGCAGGAAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTTGGTAGGTATGAAGAGGCCTTGGAATATATTTCAAGTCTTGAACCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGTAAAATTCTGATAGAGCACAAGCCAGTGGAGACAATTGATATTCTCATTAGGCTTTGCACAGAGGATGGTGACAAAAGTCGACGCTCAAATGGAGTTTATATGTCTATGTTGCCATCTCCTGTTGATTTTCTTAGCATTTTCATTCATCATCCTAAGTCCCTTATGGATTTTCTAGAAAAGTATACCAATAAGGTCAAGGATTCACCTGCTCAAGTTGAGATTCACAATACCCTCTTGGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAATGTCGCAAGTTAACGAGGGTGGAGATTACCTTAATGTAGCATCAGCAAAAACTGTGAATGTAAGTGCTCAGTCCAATGGAAGGATTGCTAATCACAAAAGTTCAGAAGAGGAAAAGGACCGTCATGGAAGGCGTGAAAAGGGTCTACACTTGCTTAGGAGTGCATGGCCTCCAGAGACAGAACATCCACTTTATGATGTTGATTTGGCCATTATACTTTGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAAAAGATGAAACTCTATAAAGAAGTGATTGCTTGCTATATGCAAGCACATGATCATGAGGGGTTGATTGCATGCTGCAAAAGACTGGGGGATTCAGTTAAAGGAGGGGATCCATCTCTTTGGGCAGATCTACTTAAATATTTTGGTGAGCTGGGCGAAGATTGCTCTAAAGAAGTAAAGGAAGTTTTGACTTATATTGAGAGGGATGATATTTTGCCCCCTATAATTGTCCTTCAAACACTTTCCAGGAATCCATGCCTCACACTTTCTGTGATCAAGGAATACATTGCTCGAAAGCTTGAGCAGGAGTCAAAGATGATCGAGGAGGACCGACAAGCCATTGAGAAATATCAGGAAGATACATTGACAATGAGAAAAGAGATTCAAGATCTTAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGCACTGCATGCACCTTCACCCTTGATCTGCCTGCTGTGCACTTTATGTGCATGCATTCATTCCACTTGCGCTGCCTTGGCGACAATGAAAAAGAATGCCCCGAGTGTGCTCCTGAATATAGGTCTGTGGTAGAAATGAGAAGAAATTTAGAACAAAATTCTAAGGATCAGGACAGGTTTTTTCAGCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAACGACCAATGGATCCACGTCTGGTCTCAGATCTGGATCTGCATCATCCACTAGTGGCTTCTAA 2883 0.4114 MYQWRKFEFFEEKYAAKCAIPDDDGDFASKKIECCSSGRGKLVTGFENGTVCFFDRGLKFNYAFQPHSSSVRFLQHLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQPESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDNGSIYCIKGDIARERITRFKLQVENHSDKTLSPITGLGFRVDGQSLQLFAATPSSVSLFSLHDQPPRRQTLDQIGCGVNSVAMSDRSELIIGRSEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMTDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGRYEEALEYISSLEPSQAGMTIKEYGKILIEHKPVETIDILIRLCTEDGDKSRRSNGVYMSMLPSPVDFLSIFIHHPKSLMDFLEKYTNKVKDSPAQVEIHNTLLELYISNELNFPSMSQVNEGGDYLNVASAKTVNVSAQSNGRIANHKSSEEEKDRHGRREKGLHLLRSAWPPETEHPLYDVDLAIILCEMNAFKDGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDPSLWADLLKYFGELGEDCSKEVKEVLTYIERDDILPPIIVLQTLSRNPCLTLSVIKEYIARKLEQESKMIEEDRQAIEKYQEDTLTMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVVEMRRNLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKTTNGSTSGLRSGSASSTSGF* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0129 960 PIRSF Vps11 1 571 IPR016528 -
Apr10g0129 960 PIRSF Vps11 568 946 IPR016528 -
Apr10g0129 960 ProSiteProfiles Zinc finger RING-type profile. 856 891 IPR001841 -
Apr10g0129 960 Gene3D - 27 335 IPR015943 GO:0005515
Apr10g0129 960 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 3 939 - -
Apr10g0129 960 Pfam Vacuolar protein sorting protein 11 C terminal 897 938 IPR024763 -
Apr10g0129 960 Pfam Region in Clathrin and VPS 404 526 IPR000547 GO:0006886|GO:0016192
Apr10g0129 960 Coils Coil 810 847 - -
Apr10g0129 960 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG 3 939 IPR016528 -
Apr10g0129 960 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 396 547 IPR000547 GO:0006886|GO:0016192
Apr10g0129 960 MobiDBLite consensus disorder prediction 651 670 - -
Apr10g0129 960 SUPERFAMILY RING/U-box 855 897 - -
Apr10g0129 960 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 563 770 IPR000547 GO:0006886|GO:0016192
Apr10g0129 960 SUPERFAMILY WD40 repeat-like 34 256 IPR036322 GO:0005515
Apr10g0129 960 Gene3D Tetratricopeptide repeat domain 337 643 IPR011990 GO:0005515
Apr10g0129 960 CDD RING-H2_Vps11 854 894 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0129 K20179 - gmx:100793279 1764.97