Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3456 ATGAACACTCCAATAGTGCTAGCTTTACCATACCCAGCTCAAGGACACGTCACTCCCTTTATGAGCTTCTCACAAAAGCTGGTCGAGAATGGATGCAAAGTCATCTTTGTTAACACGGAGATCAACCATAACCGTTTTGTGAGTTCCATGATGGTTAGGGAAAAAGACAATAATACCCTTGATGATGAAACAATAAAACTGGTTTCCGTCCCGGATGGTTTAAGCCCTGAGGACGAAAGAACCAATTTCGCCAAACAATGTGTTGGTTTGAAAAGCAGCTTGCCTTCAATTCTTGAGAAATTGATAGAAGATTATGGAGTTAGTTGCATCGTTGTTGATTTTGCAATGGGATGGGCATTGGAAGTTGCGAATAAGATGGGAATCAAAGGCGCTTTTTTCTTTCCAGCGTCAGCAGCTATGTTTGCTTTGTTGAACAATATTCCTATGCTCATTCATCGTGGCATCATAGATTCTTCTGGACTCCCAGTCACTAAAAGGACATTTCGGTTATCAGAAAGCATGGCTCTTATGAGCACAGAAACCCTGTATTGGTCAAACACTGCTAGTGATCCAATAAATGCAAAGACGCTATTCGATTATATAACGCATTGCGGACAAGCTTTAACCATGTCACACTGGTGGTTGTGCAACACTGCATATGATCTTGAGCCTGCAGTTTTCTCCTTTCTCCCAAAGATCTTACCAATTGGCCCATTGTTAAGAACCTACAACACAAATTATATTACCACATCTTTCTGGGAAGAAGATTCCTCTTGCATGAGTTGGCTTGATCAACAGCCTCACGCTTCTGTCGTGTATGCTGCCTTTGGAAGTTTTGCTCTTTTCGACGAAACACAGTTTCGCGAGCTAGCTTTTGGACTTGAGTTAACAAAAAGACCGTTTCTTTGGGTGGTGCGTCAAGATTCCGTTCACAACAAAAATGGTTCTTACAAGCATGAATTTGAAGGGAGTAAGGGTAAGATTGTGGAATGGGGTCCTCAACAGAAGATCCTAAGTCACCCTTCTATAGCTTGCTTTATAAGTCACTGTGGTTGGAATTCCACCATTGAAGGTTTGTCTAATGGAGTTCCCTTCTTGTGTTGGCCGTACTTTTCGGATCAAGTTTATGACAAAATGTATATTTGTGATGAGTTGAAAGTTGGTTTGGGATTTGATTCGGATGAAAATGGATTGATCTCGCGTGAGGAAATAAAAGCCAAAGTGGACAAACTACTTGCTGATGAGAACATTAGATTAAGGTCACGTGTGCTGAAGAAGAAGATAGAAAACAACATTCAACAAGGAGGTGGTTCTTCCCAGAACTTAAACAAGTTCATTAAGTGGTTGAAGGAATAG 1356 0.4108 MNTPIVLALPYPAQGHVTPFMSFSQKLVENGCKVIFVNTEINHNRFVSSMMVREKDNNTLDDETIKLVSVPDGLSPEDERTNFAKQCVGLKSSLPSILEKLIEDYGVSCIVVDFAMGWALEVANKMGIKGAFFFPASAAMFALLNNIPMLIHRGIIDSSGLPVTKRTFRLSESMALMSTETLYWSNTASDPINAKTLFDYITHCGQALTMSHWWLCNTAYDLEPAVFSFLPKILPIGPLLRTYNTNYITTSFWEEDSSCMSWLDQQPHASVVYAAFGSFALFDETQFRELAFGLELTKRPFLWVVRQDSVHNKNGSYKHEFEGSKGKIVEWGPQQKILSHPSIACFISHCGWNSTIEGLSNGVPFLCWPYFSDQVYDKMYICDELKVGLGFDSDENGLISREEIKAKVDKLLADENIRLRSRVLKKKIENNIQQGGGSSQNLNKFIKWLKE* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3456 451 PANTHER UDP-GLUCOSYLTRANSFERASE FAMILY PROTEIN 1 447 - -
Amo20g3456 451 Gene3D Glycogen Phosphorylase B; 247 430 - -
Amo20g3456 451 Gene3D Glycogen Phosphorylase B; 9 442 - -
Amo20g3456 451 CDD GT1_Gtf-like 6 449 IPR002213 GO:0008194
Amo20g3456 451 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Amo20g3456 451 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 256 379 IPR002213 GO:0008194
Amo20g3456 451 PANTHER EG:EG0003.4 PROTEIN-RELATED 1 447 - -
Amo20g3456 451 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3456 Amo-Chr20 144052573 144056277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3456 1 450 Glycosyltransferase AT3G02100 41.379 1.21e-118 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3456 - - gmx:100816666 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3456 20 144052573 144056277 Amo20g3456 20 144052573 144056277 ECH
Amo20g3456 20 144052573 144056277 Amo10g2821 10 93195694 93198894 hybridization
Amo14g3781 14 143130087 143132436 Amo20g3456 20 144052573 144056277 PCT