Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3440 ATGCCTGCTATGCTTGAGAGGGTTATTGAAGATCTTAGATTGAAAGATGGTGTCACAGTAAGCTGCATAGTTGCTGATTTTGTTATGGCATGGGCGTTGGAAATTGCAAGAAAGATTGGAATCAGAGGAGTTCTGTTTAATCCTGCATCAGCAGCTATGTTAGCCTTGCAGTGCAGCATACCAAAGCTTATTGAGGATGGAATCATAGACTCTAATGGGTTGGCAACCACACAAAAAAGATTTCAGTTATCACCAAGGATTCCTCCCATGGACACAGAATTTATATGGTGGGCAAAAATATCTGACTCTAAAACTGAGAAGATGTTATTCAACATTATTCTTCAATCCATGAAAACTCTAGAATCCACAGAGTGGTGCTTTTGTAACTCCACACCCGATCTTGAACCTGGAGCATTATCATTTGTACCAAAGCTATTACCAATTGGTTCATTATTAAGAACCTATGACGATGATCAAGGTGTAACTGAAAGATCATTGGGACAATTCTGGGAAGAAGATTTTTCTTGTTTGAATTGGCTTGATCAACAACCTCATGGTTCTGTTATATATGTTGCATTCGGAAGCACCACTCTTTTTGATGAAAAACAATTCAAAGAACTCGCTCTCGGACTTGAACTTACTAATAGACCCTTTCTTTGGGTGGTGCGAAAAGATTCAGATTGTAGCAATAAAGTGTGTTTTCCTAACGAATTCAAGGGGAATGAAGGTAAGATAATTGAATGGGCTCCTCAAGAAAAGGTGCTACGCCACCCTGCCATTGCTTGCTTTATAAGTCACTGCGGTTGGAATTCGACTTTGGAAGGTTTGTCTAATGGAGTGCCTTTTTTGTGTTGGCCATATTTTGCTGACCAATTCTTTGACAAAATATATATTTGTGATGAGTGGAAGGTTGGATTGGGATTTGATTTGGATGAGAATGGGATGATCTCACGCGAAGAGATAAAAGTCAAAGTTGATAAATTGCTTAGTGATGAGAACATAAMATTTAAGGCTCGTGAGCTAAAGAAGAAGCTAATGAYGGACGTTGATGTTGGAGGAAYGTCTTCAGAGAACTTAAACAAGTTCATCAACTGGTTGAAGGAATAA 1107 0.3875 MPAMLERVIEDLRLKDGVTVSCIVADFVMAWALEIARKIGIRGVLFNPASAAMLALQCSIPKLIEDGIIDSNGLATTQKRFQLSPRIPPMDTEFIWWAKISDSKTEKMLFNIILQSMKTLESTEWCFCNSTPDLEPGALSFVPKLLPIGSLLRTYDDDQGVTERSLGQFWEEDFSCLNWLDQQPHGSVIYVAFGSTTLFDEKQFKELALGLELTNRPFLWVVRKDSDCSNKVCFPNEFKGNEGKIIEWAPQEKVLRHPAIACFISHCGWNSTLEGLSNGVPFLCWPYFADQFFDKIYICDEWKVGLGFDLDENGMISREEIKVKVDKLLSDENIXFKARELKKKLMXDVDVGGXSSENLNKFINWLKE* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3440 368 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 367 - -
Amo20g3440 368 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 174 332 IPR002213 GO:0008194
Amo20g3440 368 ProSitePatterns EF-hand calcium-binding domain. 309 321 IPR018247 -
Amo20g3440 368 Gene3D Glycogen Phosphorylase B; 7 359 - -
Amo20g3440 368 Gene3D Glycogen Phosphorylase B; 164 347 - -
Amo20g3440 368 PANTHER UDP-GLYCOSYLTRANSFERASE 83A1 1 368 - -
Amo20g3440 368 CDD GT1_Gtf-like 1 346 IPR002213 GO:0008194
Amo20g3440 368 PANTHER EG:EG0003.4 PROTEIN-RELATED 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3440 Amo-Chr20 143851782 143855529 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3440 1 367 Glycosyltransferase AT3G02100 45.676 1.52e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3440 - - ahf:112716494 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3440 20 143851782 143855529 Amo20g3440 20 143851782 143855529 ECH