Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3367 ATGAGCAACGTATTCGAGGGATACGAGCGCCAGTACTGTGAGTTATCGGCGAATCTATCGAAGAAGTGCACTGCGGCTGCTTCTCTTAATGGAGAGCAAAAGAAGCAAAAAGTTTCGGAAGTAAAGACTGGAATTGATGAAGCAGAAGCTTTGATCCGAAAGATGGACCTTGAGGCGAGAAGTTTGCAGCCAAATATCAAGGCTGTTCTTCTTGCTAAGTTGCGGGAGTATAAATCTGATCTCAACAATCTTAAAAGCGAAGTTAAAAAAATTGTATCTGGTAACCTGAACCCCTCTGCACGGGATGAGTTGTTGGAATCAGGCATGGCAGATGCTATGACGGCATCAGCTGATCAGAGATCAAGATTAATGATGTCAACTGAGAGGCTGAACAAGACCAGTGAAAGAGTTAAGGACAGTAGAAGAACAATGCTGGAAACAGAAGAGCTTGGTGTTTCAATTCTTCAAGATTTGCACTCGCAACGACAATCCTTGTTGCATGCACACAATACGCTTCATGGTGTGGATGATAACATAGGCAAGAGTAAGAAAATTTTGACCAACATGTCAAGAAGGATGGACAGGAACAAATGGATTATCAGCTTCATTGTGTTCGTCCTAGTTGTTGCTATAGCCTTGATTCTATACTTCAAACTTGCAAAATAG 666 0.4204 MSNVFEGYERQYCELSANLSKKCTAAASLNGEQKKQKVSEVKTGIDEAEALIRKMDLEARSLQPNIKAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADAMTASADQRSRLMMSTERLNKTSERVKDSRRTMLETEELGVSILQDLHSQRQSLLHAHNTLHGVDDNIGKSKKILTNMSRRMDRNKWIISFIVFVLVVAIALILYFKLAK* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3367 221 Coils Coil 67 87 - -
Amo20g3367 221 PIRSF Membrin-2 1 218 IPR027027 GO:0005484|GO:0005794|GO:0016192
Amo20g3367 221 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Amo20g3367 221 SUPERFAMILY SNARE fusion complex 130 189 - -
Amo20g3367 221 SUPERFAMILY t-snare proteins 6 93 IPR010989 GO:0016020|GO:0016192
Amo20g3367 221 Gene3D - 117 197 - -
Amo20g3367 221 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 1 220 - -
Amo20g3367 221 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 220 - -
Amo20g3367 221 CDD SNARE_Vti1 127 188 - -
Amo20g3367 221 Gene3D - 1 96 IPR038407 -
Amo20g3367 221 Pfam Snare region anchored in the vesicle membrane C-terminus 128 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3367 Amo-Chr20 142488942 142492189 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3367 K08493 - gmx:100815385 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3367 20 142488942 142492189 Amo20g3367 20 142488942 142492189 ECH