Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3201 ATGGGGAGTGATGACAGTCTGAAGGCATGGGTATCAGATAAGTTGATGTCACTGCTTGGATATTCTCAGCCCACAGTTGTACAGTACATGATTGGATTATCCAAGCAGGCTGCTTCACCAGCAGATTTGGCGGGTAAACTAGTGGAGTTTGGGATCTCATCGTCAGATACTCATGCATTTGCTGATGAAATATTCTCTCGAGTTCCTCGTAAATCTTCTGGTTTAAATCAATATCAGAAACAAGAGAGAGAAGCTGCAATGTTGGTAAGGAAGCAGAGGACTTATGACATTTTGAAGGCTGATGATGATGATGATTATGTTGGTGGTGAAGATAAATCTTCCAAAGCTACTACTTCAACGTCTAAAAAGATTGATAGCCGTAACAAACGTTTCAGGAAGAAAACTGAATATCAAGATGATGAAGATGATGAGGTAATTTCAAGAAAGGAAATGGAGAGACAAGTTAAGAGACGAACTTCTCCCGGTGAAGATACTGGATCAGAGGTGTCAGAAGAAGAAAGATTAAAAGATCAAAGAGAGAAGGAGGAACTAGAGCAACATCTGAAAGAAAGAGATGCAGCAGGGACCCGGAAGTTGACTGAACAAAAATTGACAAGAAGGGAAGAAGAAGAGGCAATTCGAAGATCTACTGCACAAGAGCAGGATGATATTCAAGCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAGAAGAAGTTAGAAGAACTGAGAGATGATATAGAAGATGAACAATATTTGTTTGAGGGCGTGAAGCTTACCGAAGCAGAATATCGTGAGCTTAGATACAAGAAAGAAATATATGAACTTGTAAAGAAACGGTCAGAGGAGGCTGACAATGTCAATGAGTATAGGATGCCAGAAGCTTATGATCAGGAAGGTGGTGTTAATCAGGAGAAGAGATTTTCTGTGGCTATGCAACGTTACAGGGATACAAATGCTGAGGAGAAAATGAACCCATTTGCTGAACAAGAGGCATGGGAGGAACACCAAATCGGAAAGGCAACGCTAAAGTATGGTTCAAAAAATAAAAAACAAGCCGCCGATGACTATCAGTTTGTTTTCGAGGACCAGATTGATTTTATCAAGGCATCAGTGATGGATGGAGATAATTTTGATTATGAAGAAATGGAAGATTCACTTGAAAAGTCCAGAGCAAAGTCAGCTTTAGAGGCACTTCAGGAGGAGAGGAAAAAGTTGCCCATTTATCCTTATCGGGACGAATTGCTCCAAGCCGTGCGTGATCATCAGGTGCTTGTAATTGTTGGAGAAACTGGTTCTGGAAAGACCACACAGATTCCCCAATATCTTCATGAGGCTGGCTACACAAAGCAAGGAATGATTGCATGTACCCAACCACGGCGTGTTGCAGCTATGAGTGTTGCTGCTCGTGTTTCTCAAGAAATGGGTGTTAAGCTAGGACATGAGGTTGGTTACTCTATCCGGTTCGAGGACTGTACATCGGAGAAGACTATTCTGAAATATATGACTGATGGAATGTTGTTGAGGGAATTCCTTGGTGAACCTGATCTGGCAAGTTACAGTGTTGTCATGGTGGATGAGGCTCATGAAAGGACACTCTCAACTGATATTTTATTTGGATTAGTAAAGGATATTTCTCGTTTCCGGCCTGATCTTAAGTTGCTGATATCTAGTGCTACACTAGATGCAGAGAAGTTCAGTGACTACTTTGATTCTGCTCCAATATTTAAAATTCCAGGGAGACGGTATCCTGTTGAAATAAACTTTACAAAAGCACCAGAAGCTGACTACTTAGATGCAGCTATTGTCACATCACTTCAAATCCATGTCACTCAACCTCCTGGTGATATCTTGGTGTTCCTTACTGGTCAAGAAGAAATTGAAACTGCTGAAGAAATCTTAAAGCATCGAACTAGAGGCTTGGGCACAAAAATTGCCGAGTTAATAATATGCCCTATATATGCCAACCTACCAACTGAGCTACAGGCTAAAATATTTGAACCCACACCTGAAGGGGCAAGAAAGGTTGTCCTTGCAACTAATATTGCTGAAACATCGTTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCCTTATTGGTAACACCCATCTCAAAAGCTTCAGCAATGCAAAGAGCTGGGCGTTCTGGAAGAACAGGACCTGGGATGTGCTTCCGATTGTATACTGCATATAACTTTCACAATGATCTAGATGATAACACTGTTCCAGAAATACAACGGACTAACCTGGCAAATGTAGTGTTGACTTTGAAAAGTCTTGGTATTCATGACTTACTTCACTTTGACTTTATGGATCCTCCACCTGCAGAGGCATTATTGAAAGCCCTAGAGCTTCTGTTTGCATTAAGTGCACTAAATAAACTGGGTGAGTTAACAAAGGTTGGAAGACGGATGGCAGAGTTCCCAGTTGATCCTATGTTGTCAAAAATGATTGTAGCTTCAGAAAAGTACAAGTGTTCAGATGAGATCATTTCTATTGCTGCTATGCTTTCTGTTGGGAACTCGATTTTTTATCGTCCAAAGGATAAACAAGTCCATGCAGACAATGCAAGGATGAACTTTCACACTGGAAATGTTGGAGACCATATTGCATTGCTAAAGGTCTACAACTCATGGAAGGAGACCAACTATTCAACACAATGGTGCTATGAAAATTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATGTCCGTGATCAACTCGCAGGTCTTCTAGAGCGGGTTGAGATTGAACTAACGTCAAATTCTAGCGATTTGGATGCCATCAAGAAATCCATAACATCTGGATTTTTCCCACATTCTGCACGACTGCAAAAGAATGGATCATATCGAACTGTTAAACATCCACAGACTGTTAACATACATCCTAGTTCGGGGCTGGCACAGGTTCTTCCAAGATGGGTTGTATATCATGAACTAGTGCTTACAACCAAGGAATATATGAGACAGGTCACTGAATTAAAGCCAGAGTGGTTGGTGGAGATAGCTCCTCACTATTACCAGCTCAAGGATGTTGAAGACGCTGGTTCCAAGAAAATGCCCCGTGGAGAAGGACGTGCACAATAG 3150 0.4121 MGSDDSLKAWVSDKLMSLLGYSQPTVVQYMIGLSKQAASPADLAGKLVEFGISSSDTHAFADEIFSRVPRKSSGLNQYQKQEREAAMLVRKQRTYDILKADDDDDYVGGEDKSSKATTSTSKKIDSRNKRFRKKTEYQDDEDDEVISRKEMERQVKRRTSPGEDTGSEVSEEERLKDQREKEELEQHLKERDAAGTRKLTEQKLTRREEEEAIRRSTAQEQDDIQALRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLTEAEYRELRYKKEIYELVKKRSEEADNVNEYRMPEAYDQEGGVNQEKRFSVAMQRYRDTNAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQAADDYQFVFEDQIDFIKASVMDGDNFDYEEMEDSLEKSRAKSALEALQEERKKLPIYPYRDELLQAVRDHQVLVIVGETGSGKTTQIPQYLHEAGYTKQGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGMCFRLYTAYNFHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPVDPMLSKMIVASEKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDVRDQLAGLLERVEIELTSNSSDLDAIKKSITSGFFPHSARLQKNGSYRTVKHPQTVNIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDAGSKKMPRGEGRAQ* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3201 1049 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 525 534 IPR002464 -
Amo20g3201 1049 Pfam Helicase associated domain (HA2) 802 876 IPR007502 GO:0004386
Amo20g3201 1049 MobiDBLite consensus disorder prediction 101 231 - -
Amo20g3201 1049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 606 781 IPR001650 -
Amo20g3201 1049 PANTHER ATP-DEPENDENT RNA HELICASE 107 1047 - -
Amo20g3201 1049 PANTHER OS05G0389800 PROTEIN 107 1047 - -
Amo20g3201 1049 Coils Coil 919 939 - -
Amo20g3201 1049 Coils Coil 167 187 - -
Amo20g3201 1049 Coils Coil 230 257 - -
Amo20g3201 1049 Pfam Helicase conserved C-terminal domain 613 740 IPR001650 -
Amo20g3201 1049 SMART helicmild6 632 740 IPR001650 -
Amo20g3201 1049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 420 583 IPR014001 -
Amo20g3201 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 934 IPR027417 -
Amo20g3201 1049 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 950 1027 IPR011709 -
Amo20g3201 1049 Gene3D - 370 585 IPR027417 -
Amo20g3201 1049 Gene3D - 785 944 - -
Amo20g3201 1049 SMART ultradead3 408 592 IPR014001 -
Amo20g3201 1049 CDD SF2_C_RHA 587 748 - -
Amo20g3201 1049 Gene3D - 586 761 IPR027417 -
Amo20g3201 1049 SMART ha2_5 801 893 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3201 Amo-Chr20 138019647 138034645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3201 K12813 - gmx:100809559 1843.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3201 20 138019647 138034645 Amo20g3201 20 138019647 138034645 ECH