Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3162 ATGGAGAACAATAGCTGGGAGCAGACTCTGCAAGATGGAAAACTCTATCGGCACCTCAATTCCCTAATCGTCGCTCATCTTCGCGACAGCAATCTTACTCAGGCTGCAAGTGCTGTAGCTTCAGCAACTATGACACCACTGAKTGTGGAAGCTCCACCCAACAAGCTTCTTGSGCTGGTTGCTAAGGGTCTTGCAGTGGAGAAAGATGATGTTTTCAAAGGGACTTTGTCGTCTCCTTTTTGCGACTTGGGTGCACCGGTGCTGCCGACTCATCCTGGAGCTACCATCATTGATTTCAGTGCTGTGCCAGATATAAAAGGCACGTCTAAAAGCTTTCCAAAGCACGAGACACGACACCTTTCAGAGCACAAGAATATTGCCAGATGTGCTAGATTTAGTCCTGATGGGAAGTTTGTTGCGACTGGTAGTGCAGATACATCAATAAAGCTTTTTGAGGTTTCAAAGATCAAGCAAATGTTACTTCCGGATGCAAAGGATGGCCCTGTGCGGCCTGTAATTCGAACATTTTATGACCACACACAACCAATAAATGATCTGGATTTTCATCCACAAGGTACCATCTTGGTTTCTGGAGCTAAAGATCAAACAATGAAGTTTTTTGATATTTCTAAGACCAATGCAAAGAGAGCATACAGGGTTATACAGGATACACACAATGTTCGATCTGTATCGTTTCATCCTTCTGGAGACTTTCTTCTCGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTCCAGTGTTATCTATCAGCAAACATTCCAGAGGTTGGCCCAAATGGAGCCATAAACCAGGTCAGATATTCTTGTACAGGTGCCATGTATGTTACGGCATCTAAAGATGGTGTTATTCGGTTGTGGGATGGCATCACTGCTAATTGTGTGCGCTCGATAACTGGAGCACATGGAACAGCTGAGGCTACAAGTGCAATTTTTACAAAGGATGAAAGGTTTGTGCTCTCCTGTGGTAAGGATTCTACCATAAAGCTTTGGGAAGTTGGTTCTGGAAGATTAGTCAAACAATATCTTGGAGCCATGCATACACAGCTAAGATGCCAGGCAATTTTCAACGAGACAGAAGAGTTTATTCTTTCCATAGATGAACTGAACAATGAGATCGTTATCTGGGATGCAATGACAACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTCGGCGCACCCCGCTGGATCGATCACTCGCCAACAGAGTCGGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTAGGTTCTGGAAGGAAACTATATAA 1302 0.4355 MENNSWEQTLQDGKLYRHLNSLIVAHLRDSNLTQAASAVASATMTPLXVEAPPNKLLXLVAKGLAVEKDDVFKGTLSSPFCDLGAPVLPTHPGATIIDFSAVPDIKGTSKSFPKHETRHLSEHKNIARCARFSPDGKFVATGSADTSIKLFEVSKIKQMLLPDAKDGPVRPVIRTFYDHTQPINDLDFHPQGTILVSGAKDQTMKFFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANIPEVGPNGAINQVRYSCTGAMYVTASKDGVIRLWDGITANCVRSITGAHGTAEATSAIFTKDERFVLSCGKDSTIKLWEVGSGRLVKQYLGAMHTQLRCQAIFNETEEFILSIDELNNEIVIWDAMTTEKVAKWPSNHVGAPRWIDHSPTESAFISCGTDRSVRFWKETI* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3162 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 351 IPR001680 GO:0005515
Amo20g3162 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
Amo20g3162 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 161 IPR001680 GO:0005515
Amo20g3162 433 SUPERFAMILY WD40 repeat-like 112 430 IPR036322 GO:0005515
Amo20g3162 433 Gene3D - 106 432 IPR015943 GO:0005515
Amo20g3162 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 210 - -
Amo20g3162 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Amo20g3162 433 CDD WD40 116 430 - -
Amo20g3162 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 154 - -
Amo20g3162 433 Pfam WD domain, G-beta repeat 117 151 IPR001680 GO:0005515
Amo20g3162 433 Pfam WD domain, G-beta repeat 224 247 IPR001680 GO:0005515
Amo20g3162 433 Pfam WD domain, G-beta repeat 272 298 IPR001680 GO:0005515
Amo20g3162 433 Pfam WD domain, G-beta repeat 173 208 IPR001680 GO:0005515
Amo20g3162 433 Pfam WD domain, G-beta repeat 303 341 IPR001680 GO:0005515
Amo20g3162 433 ProSitePatterns Trp-Asp (WD) repeats signature. 329 343 IPR019775 -
Amo20g3162 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Amo20g3162 433 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 6 432 IPR044633 GO:0005848|GO:0031124
Amo20g3162 433 SMART WD40_4 255 298 IPR001680 GO:0005515
Amo20g3162 433 SMART WD40_4 390 430 IPR001680 GO:0005515
Amo20g3162 433 SMART WD40_4 301 342 IPR001680 GO:0005515
Amo20g3162 433 SMART WD40_4 113 152 IPR001680 GO:0005515
Amo20g3162 433 SMART WD40_4 169 208 IPR001680 GO:0005515
Amo20g3162 433 SMART WD40_4 214 252 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3162 Amo-Chr20 136848716 136854494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3162 173 429 Miscellaneous Gene Families AT5G08390 21.318 2.44e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3162 K14406 - gmx:100809908 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3162 20 136848716 136854494 Amo20g3162 20 136848716 136854494 ECH