Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3128 ATGGGTTGTTTGGCGCCACAACTGCCACTCTCATCCCATCACCTCCATAACCGCCGCATTCTTGACTCATCCACTCAAATCCCAAAATCATCCCTCACTCCCTCAATCCACCGAAACCACAATCTCCGCCTCGCCGGCAACTTTAACGACGCCGTGACCTCTCTCCACTTCAACTCCAACGACGCCGTTTCAACGTCACAATCCATTACAGCGCTGCTCCAGCAATGCATTCTCCACAAAAACATCCAACTTGGCCGGACCCTTCATTCACTCATCTCCACGTCCCCTCAGCTCCGCAACGACGTCGTTCTCACTACCCGCTTAATCACCATGTACGCCGCATGCGCCTCACCCTCCGAATCACGTTCAGTGTTCCAGAATTTTCCCAACAAGAAAGACCTATTCCTCTACAACGCGCTTCTCAGCGGTTACGCGCGCAACGCGCTCTACCGTGACGCCATTTTGCTCTTCGTTGAATTGATCTCCGTCGCAGGGCTTCTGCCGGACAATTTCACGCTGCCATGTGCTGTCAAGGCCTGCGCCGGGCTCACCGAGGTGGAACTCGGGGAAGCGCTTCACGCGCTTGCGTTGAAGCTGGGACTGTGCTCTGATTCGTTTGTGGGGAATGCGCTTATTGCTATGTATGGGAAGTGTGGGTTTGTTGAGAGTGCGTTCAAGGTGTTTGAGAAAATGCCTCGGAGAAACTTGGTTTCCTGGAACTCAATTATGCTTGTGTGCTCGGAGAACGGGCTTTTTGATGAGATTTGTGGTCTGTTTAAGGGGCTTTTGTTGAATGATGGTGGTGATGAAGGTTCGGTACCTGATGTTGTTAGTGTGGTCACAATGGTTCCTGTGGTTGCTGCAATGGGTGAAGTGAAATTGGGGATGCTGCTTCATGGTTTGGCTTTGAAACTGGGGCTTTGTGGTGACTTGAAGGTTAGTAATTCACTTATGGATATGTATTCGAAATGTGGTTACTTGTGTGAGGCGCGAGTTGTGTTTGATTTGATCAGTGACAAGAATGTTGTGTCTTGGAATTCTATGATTAGAGGGTACTCCAAGGCTGGTGATTCTCGCGGAACATTTGAGCTGCTACGGAAGATGACAATGGAAGAGAAAATATTGGTAAACGAGGTGACAGTGTTGAATGTTCTGCCAGCTTGTTTAGAAAAGATTCACTTGTTAAGCTTGAAAGAGATTCACGGTTATGCCCTTAGGCGTGGGCTTCAGAATGATGAATTAGTAGCCAATGCTTTTGTTGCTGCGTACCCAAAGTGTGGTTCAATGGATTGTGCTGAGCGTGTGTTTAATGGAATGGCGGGGAAAACTGTGAGCTCTTGGAATGCATTGATTGGTGCCCTTGCGCAAAATGGATTTCCTGAAAAGGCTTTAGACTTGTACCTTGTGATGACGGCTTCTGGGTTGGATCCTGATTGGTTTACAATTGGAGCCATTCTACTCGCTTGTGCCCAACTCAAACTCCTACGCTCTGGCAAGGAGATTCATAGTTTCATGTTGCGAAATGGTTTAGAATCAGATGAGTTTATTGGGATATCGTTGCTGTCGCTTTATATTAACTGTGGAGAAATGTTGCCAGCAAAACTCCTTTTCGATAAGATGGAAAACAAAAGTTCAGTGTGCTGGAATACAATGATTACTGGCTTTTCACAGAATGGACTTCCTTGTGAGGCCCTTGATACATTCCGGCAAATGCTTTCAAGTGGAACTCACACTCAAGAGATTGCCTTAATGGGTGTTATGGATGCTTGTTCACAAGTTTCAGCCTTGCGGCTGGGAAAAGAAGTTCATTCCTTTGCACTGAAAGCTCATCTTACAGAGGATACCTTTGTAACTTGCTCACTGATAGACATGTATGCAAAATGTGGATGCATGGAACAATCTCAAAACATTTTTGAGAGGATAATTGAGAAAGATGAAGCATCTTGGAATGTTATAATTGCAGGACATGGAGTTAATGGGAATGGATTGAAGGCATTAGAACTTTTTGAACTAATGCAAAGATCGGGCTGCAGACCAGATTCTTATACATTTATGGGAGTTCTGATGGCCTGTAACCATACTGGCTTGGTGACAGAAGGGTTAAAATATCTTGATCAGATGCAGACTTTGCATGGCATAAAGCCAAAATTAGAGCATTATTCATGTGTGGTGGATATGCTTGGTCGGGCAGGACAACTCAGTGAAGCTCTAAAACTTGTAAATGAGCTGCCATATGAACCAGATTCGGGGATATGGAGTTCATTACTTAGTTCCTGTAGGAATTATCGTGATTTGGATATAGGGGAGAAAGCTTCCAAAAAGTTATTAGAGTTGGGGCCAGAAAAAGTTGAGAATTATGTACTGCTATCGAACTTATATGCTGGGCTAGGAAAATGGGACGACATGAGACAGGTGCGGCGGAAGATGAAGGAGATTGGCCTTCAGAAAGATGCAGGCTGCAGTTGGATTGAAATCGGAGGAAAGGTTTATAGATTTCTTGTTGGTGATGGAGGCTTTTTAGAATCAAAACAAGTTCAAAAGACTTGGGTTAAATTGGAGAAAAAAATAAGCAAAATTGGATATAAACCCGACACAAGTTGTGTGCTTCATGAACTAGAAGAAGAGGAAAAGATTAAAATTCTTAAGAGCCATAGTGAGAAGCTAGCAATTTCATTTGGTTTGTTACATACAGCTGAAGGTACAACGCTGAGGGTTTGTAAAAATCTTCGCATTTGTGTAGATTGTCACAATGCAATAAAATTGGTATCCAAGGTTGTTGAAAGGGAGATTATTGTTAGGGACAATAAGCGCTTTCATCATTTTAAAAGTGGACTTTGTTCCTGTGGAGATTATTGGTAG 2859 0.4421 MGCLAPQLPLSSHHLHNRRILDSSTQIPKSSLTPSIHRNHNLRLAGNFNDAVTSLHFNSNDAVSTSQSITALLQQCILHKNIQLGRTLHSLISTSPQLRNDVVLTTRLITMYAACASPSESRSVFQNFPNKKDLFLYNALLSGYARNALYRDAILLFVELISVAGLLPDNFTLPCAVKACAGLTEVELGEALHALALKLGLCSDSFVGNALIAMYGKCGFVESAFKVFEKMPRRNLVSWNSIMLVCSENGLFDEICGLFKGLLLNDGGDEGSVPDVVSVVTMVPVVAAMGEVKLGMLLHGLALKLGLCGDLKVSNSLMDMYSKCGYLCEARVVFDLISDKNVVSWNSMIRGYSKAGDSRGTFELLRKMTMEEKILVNEVTVLNVLPACLEKIHLLSLKEIHGYALRRGLQNDELVANAFVAAYPKCGSMDCAERVFNGMAGKTVSSWNALIGALAQNGFPEKALDLYLVMTASGLDPDWFTIGAILLACAQLKLLRSGKEIHSFMLRNGLESDEFIGISLLSLYINCGEMLPAKLLFDKMENKSSVCWNTMITGFSQNGLPCEALDTFRQMLSSGTHTQEIALMGVMDACSQVSALRLGKEVHSFALKAHLTEDTFVTCSLIDMYAKCGCMEQSQNIFERIIEKDEASWNVIIAGHGVNGNGLKALELFELMQRSGCRPDSYTFMGVLMACNHTGLVTEGLKYLDQMQTLHGIKPKLEHYSCVVDMLGRAGQLSEALKLVNELPYEPDSGIWSSLLSSCRNYRDLDIGEKASKKLLELGPEKVENYVLLSNLYAGLGKWDDMRQVRRKMKEIGLQKDAGCSWIEIGGKVYRFLVGDGGFLESKQVQKTWVKLEKKISKIGYKPDTSCVLHELEEEEKIKILKSHSEKLAISFGLLHTAEGTTLRVCKNLRICVDCHNAIKLVSKVVEREIIVRDNKRFHHFKSGLCSCGDYW* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3128 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Amo20g3128 952 Pfam E motif 762 824 IPR046848 -
Amo20g3128 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 168 IPR002885 -
Amo20g3128 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Amo20g3128 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Amo20g3128 952 Pfam PPR repeat 343 369 IPR002885 -
Amo20g3128 952 Pfam PPR repeat 237 260 IPR002885 -
Amo20g3128 952 Pfam PPR repeat 209 235 IPR002885 -
Amo20g3128 952 Pfam PPR repeat 719 743 IPR002885 -
Amo20g3128 952 Pfam PPR repeat 136 161 IPR002885 -
Amo20g3128 952 Pfam PPR repeat 446 474 IPR002885 -
Amo20g3128 952 Pfam PPR repeat 546 575 IPR002885 -
Amo20g3128 952 Gene3D Tetratricopeptide repeat domain 293 397 IPR011990 GO:0005515
Amo20g3128 952 Gene3D Tetratricopeptide repeat domain 496 606 IPR011990 GO:0005515
Amo20g3128 952 Gene3D Tetratricopeptide repeat domain 36 186 IPR011990 GO:0005515
Amo20g3128 952 Gene3D Tetratricopeptide repeat domain 187 292 IPR011990 GO:0005515
Amo20g3128 952 Gene3D Tetratricopeptide repeat domain 398 495 IPR011990 GO:0005515
Amo20g3128 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Amo20g3128 952 Pfam DYW family of nucleic acid deaminases 860 952 IPR032867 GO:0008270
Amo20g3128 952 Gene3D Tetratricopeptide repeat domain 618 833 IPR011990 GO:0005515
Amo20g3128 952 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 292 388 - -
Amo20g3128 952 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 392 940 - -
Amo20g3128 952 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 98 290 - -
Amo20g3128 952 TIGRFAM PPR: pentatricopeptide repeat domain 546 575 IPR002885 -
Amo20g3128 952 TIGRFAM PPR: pentatricopeptide repeat domain 648 681 IPR002885 -
Amo20g3128 952 TIGRFAM PPR: pentatricopeptide repeat domain 343 377 IPR002885 -
Amo20g3128 952 TIGRFAM PPR: pentatricopeptide repeat domain 136 169 IPR002885 -
Amo20g3128 952 TIGRFAM PPR: pentatricopeptide repeat domain 209 236 IPR002885 -
Amo20g3128 952 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Amo20g3128 952 Pfam PPR repeat family 644 691 IPR002885 -
Amo20g3128 952 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 392 940 - -
Amo20g3128 952 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 98 290 - -
Amo20g3128 952 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 292 388 - -
Amo20g3128 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3128 Amo-Chr20 135782875 135785733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3128 118 952 Glycoside Hydrolase AT3G49170 33.882 2.40e-159 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3128 - - gmx:100779971 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3128 20 135782875 135785733 Amo20g3128 20 135782875 135785733 ECH