Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3123 ATGTCGAAGCTTCTTGTTCCACCACCGCCCACTCTTCACAACTTCACTTCCATTCGCACCTTATCCTCTTACACTTCTCCTTCTCGCCTTCCTCTTCTCTCCATTATTCCCAAACTACCCTCCTTCAGCACTCGCAACTCTCGTAGTAGGACTCGCCTTCCCCTCCCTCGCGCTTTCGATTCCGATTCTGATTCCAATTCTGAAGCTGCCGTTGACAATAATCAAACTGTTACGATTCCTGATGAGGAGTATCCCACTGGCGAATTCAAATTCGAACCAGTTACTGGATTCCGGAGCTTGCTCGTCAAGCTTAACATGCTCTTTGCCTTACCCTGGGAGCGCGTTCGCAAGGGTAGCGTCCTCACCATGAAGCTTCGTGGCCAGATATCCGATCAGGTGAAGACTAGGTTTTCTCCTGGACTCTCTCTGCCTCAGATTTGTGAGAATTTCGTGAAAGCTGCTTATGATCCTCGTATTTCTGGGATCTATCTGCATATTGAAGGTTTGAATTGTGGGTGGGGCAAAGTTGAGGAAATTCGAAGACACATATTGAATTTCAAACAATCGGGAAAGTTCGTTGTGGCTTTCGTCCCTACATGCCAAGAAAAAGAATATTACCTTGCATGTGCGTGTGAAGAGATATATGCGCCCCCAAGTGCTTACTTTTCATTGTTTGGATTGACTGTTCAAGCCTCATTCCTTAGAGGGGTTTTAGATAATATAGGAATTGAACCACAAGTTGAAAGGATTGGGAAATATAAAAGTGCAGGAGATCAACTAGCACGAAGAACCATTTCCGAAGAAAATTGTGAAATGCTGACTGCATTGCTTGATAACATCTATTCAAATTGGCTAGATAAAGTCTCTTCTGCCAAAGGAAAGAAAAGAGAAGACATCGAGAACTTCATAAATGAAGGTGTCTATCAAGTAGATAAGCTTAAAGAAGAGGGCCTCATATCGAACATAATCTATGATGATGAGGTTATTGCCATGTTGAAGGAGAGAACTGGAGTGAAAACAGAGAAAAATCTGCCTATGGTGGATTATAGGAAATACTCTCGAGTTAAGAAATGGACCGTTGGAATACCAAGTGGTAAAGATTTGATAGCCATCATTCGAGCCTCCGGGAGCATTAGCCGTGTTGAGAGCCAAGTAAGTGTGTCTAGCTCAGGTATCATTGCGGAGAAGTTCATTGAGAAGATTCGCAGTGTCAGAGAGTCAAAAAAATTTAAGGCTGCTATCATCCGAATTGATAGTCCTGGAGGAGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCCGGCTTTTGGCTGCTTCAAAACCAGTCATTGCTTCAATGGCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAACACAAGCCATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTGGGAAAGTTGTATGAGAAGATTGGCTTTAACAAGGAGGTCATATCCAGAGGAAGATATGCTGAAGTCCTTGCAGCCGAACAACGTCCATTCAGACCAGATGAAGCAGAGTTATTTGCCAAATCTGCACAGCATGCTTATAAACAATTTCGAGACAAGGCAGCTTTATCCAGATCAATGACTGTAGATAAGATGGAGGAGGTTGCGCAGGGTAGGGTTTGGACTGGCAATGATGCAGCTTCACGCGGTTTGGTCGATGCTATTGGTGGGCTATCACGAGCTATTGCCATCGCAAAATCGAAGGCAAACATACCTCAAGACAGAGAGGTTACTCTTGTGGAGATCTCTAGACCTAGCCCTTCTCTTCCCCAGATTTTATTAGGCGTAGGAAGTTCTCTAATTGGAGCAGAACAAACATTGAAAGAATTGTTACAAGGCTTGACATTCTCTGAAGGAGTTCAAGCTCGGATGGATGGAATCATGTTTCAGACATTGGAGGGATCTCCTTATACTAACCCCATTTTGTCAATAATAAAAGATTACCTCAGTTCCCTGTAA 2010 0.4363 MSKLLVPPPPTLHNFTSIRTLSSYTSPSRLPLLSIIPKLPSFSTRNSRSRTRLPLPRAFDSDSDSNSEAAVDNNQTVTIPDEEYPTGEFKFEPVTGFRSLLVKLNMLFALPWERVRKGSVLTMKLRGQISDQVKTRFSPGLSLPQICENFVKAAYDPRISGIYLHIEGLNCGWGKVEEIRRHILNFKQSGKFVVAFVPTCQEKEYYLACACEEIYAPPSAYFSLFGLTVQASFLRGVLDNIGIEPQVERIGKYKSAGDQLARRTISEENCEMLTALLDNIYSNWLDKVSSAKGKKREDIENFINEGVYQVDKLKEEGLISNIIYDDEVIAMLKERTGVKTEKNLPMVDYRKYSRVKKWTVGIPSGKDLIAIIRASGSISRVESQVSVSSSGIIAEKFIEKIRSVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASGGYYMAMGTQAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEVISRGRYAEVLAAEQRPFRPDEAELFAKSAQHAYKQFRDKAALSRSMTVDKMEEVAQGRVWTGNDAASRGLVDAIGGLSRAIAIAKSKANIPQDREVTLVEISRPSPSLPQILLGVGSSLIGAEQTLKELLQGLTFSEGVQARMDGIMFQTLEGSPYTNPILSIIKDYLSSL* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3123 669 CDD S49_SppA_67K_type 121 334 - -
Amo20g3123 669 Pfam Peptidase family S49 186 338 IPR002142 GO:0006508|GO:0008233
Amo20g3123 669 Pfam Peptidase family S49 437 588 IPR002142 GO:0006508|GO:0008233
Amo20g3123 669 SUPERFAMILY ClpP/crotonase 112 327 IPR029045 -
Amo20g3123 669 Gene3D - 514 639 - -
Amo20g3123 669 Gene3D - 364 513 - -
Amo20g3123 669 PIRSF Protease_4_SppA 66 668 IPR004634 GO:0006465|GO:0008233|GO:0016021
Amo20g3123 669 MobiDBLite consensus disorder prediction 60 79 - -
Amo20g3123 669 SUPERFAMILY ClpP/crotonase 360 574 IPR029045 -
Amo20g3123 669 MobiDBLite consensus disorder prediction 43 79 - -
Amo20g3123 669 CDD S49_Sppa_N_C 369 583 IPR002142 GO:0006508|GO:0008233
Amo20g3123 669 Gene3D - 118 354 - -
Amo20g3123 669 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 370 583 IPR004635 GO:0006508|GO:0008233
Amo20g3123 669 PANTHER PROTEASE 4 64 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3123 Amo-Chr20 135764901 135771866 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3123 K04773 - gmx:100781522 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3123 20 135764901 135771866 Amo20g3123 20 135764901 135771866 ECH