Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3067 ATGGATCAGAAGATGGATTTCAATGCCCCTCATTCCATGGGAACCACCATCATTGGCGTCACGTACAACGGCGGCGTCGTCCTCGGCGCCGATTCTCGCACCAGCACCGGAGTGTATGTTGCTAACCGCGCTTCGGATAAAATCACACAACTTACTGATAATGTCTACGTCTGTCGCTCTGGATCGGCTGCAGATTCTCAGGTTGTCTCTGACTATGTTCGCTACTTCCTTCATCAACACACTATACAGCTTGGACAACCTGCAACAGTCAAAGTTGCTGCCAACCTTGTTCGGCTTCTTTCATATAACAACAAGAATTTCTTAGAGACTGGCTTGATTGTTGGTGGTTGGGACAAATATGAAGGTGGCCAAATTTATGGAGTTCCTCTTGGTGGAACTATAGTGCAACAACCTTTTGCTATTGGAGGATCTGGCTCCAGTTACTTGTATGGTTTTTTCGACCAAGCCTGGAAGGAAGGAATGACCAAGGATGAAGCTGAGGATTTAGTGAAAAAGGCAGTTTCACTTGCCATTGCTAGGGACGGAGCAAGTGGTGGTGTCGTCCGAACAGTCATTATAAACTCGGAGGGAGTGACGAGAAACTTCTACCCCGGTGATCAACTTCCGCTATGGCACGAGGAATTGGAGCCGCAGAACTCATTGCTAGACATCCTTGGTGCCCCTGAGCCAATGAACATCTGA 702 0.4801 MDQKMDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEELEPQNSLLDILGAPEPMNI* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3067 233 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
Amo20g3067 233 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 204 IPR029055 -
Amo20g3067 233 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 7 228 - -
Amo20g3067 233 CDD proteasome_beta_type_6 15 202 - -
Amo20g3067 233 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Amo20g3067 233 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Amo20g3067 233 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Amo20g3067 233 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Amo20g3067 233 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Amo20g3067 233 PANTHER PROTEASOME SUBUNIT BETA 7 228 - -
Amo20g3067 233 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 214 IPR029055 -
Amo20g3067 233 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3067 Amo-Chr20 134396456 134400555 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3067 K02738 - gmx:100793551 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3067 20 134396456 134400555 Amo20g3067 20 134396456 134400555 ECH
Amo10g2484 10 86739990 86743964 Amo20g3067 20 134396456 134400555 hybridization