Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3020 ATGGAAACGACACGCCGCCGTCACGACCTCCATTTACTGCATCCATCCTCTCTGCAAACCAGCAACTTCAACGGTTTTGCGATCCTGCAATTCGCCCTTCCCCCACCGCAACTTCACCGTCGGCGAGAAACAAAGCTCGCAGTCTCGGTTTACAGCACCATCGGAGAACTTCTGCACACTCCTAATATCTCGAATCCTCTACAATCCAAAAGGAATTTTTCGGTGCGTAAAAACCCCATGGCCGCTGAAGAGCCTAGCAAATTAGATGATCCTGAATTTCAGTGGGGAAAAAAGAAAGGTGTTGGTGGTAAGAAGAAGGATGTACAATTTTACTCGTCTTTTACCTATGATGGTGTAGAATACACACTGTATGACTCTGTGTATCTCTACAAGGAGGGTGAACCTGAGCCTTATATCGGGAAGCTTATTAAGATATGGGAAACTGCTGATAAGGCAAAGAAAGTGAAGGTTCTGTGGTATTTCCGTCCGGGTGAGATTCGGAACTTTCTCGAAGGATGCGAGGTTGGCGGGAACGAGCTGTTCTTGGCGTGTGGAGATGGAGTAGGGCTTGCAAATCTAAATCCACTGGAAGCTATTGTTGGCAAATGCAATGTTCTTTGCATTTTGAAGGATAGCAGGAATCCACAGCCATCAAATGAAGAACTACATCTGGCTGAATTTGTATTCTATCGATTCTTTGATGTAGGGCAGAGAAAAGTATTGGATAAGATAGATGATATGATTGCTGGATTTCAAAAAGAATCTCCCGGAGTTACTCCAAGGCCGTATGTTGAGGATGGCCCTTCCAAGAAGTTAAAGACTACTGAGAAACTCTCAAAACCCCCAAGCGACAAGTTTCGAAAGGAATCTCCCAGAGTTTCTCCATCTGAGGAACCCAAGTTGGATTGCAATGTAGCCGAAGTGACTAGAAGACCCGATGTTCCTTGGGAAGAAAGAATGAAAACTGCTCATGAACGAGGAAAACTTGTGCTACTTGAAAATTTGGATCCATCTTTAACATCAGAACAAGTACAAGATATCATTTTTCAAGGCTTTAAAGAAAGTTGCACTGCACACATGATCCAGAAAACCGCGTGTGCTAGCCCTCATTCTGGTCAAGCTTTTGTTATATTTAAAAAAAAGGAAACAGCAGATATGGTTGTTAAAAAATTACAGGAGGATTCTCTATTAATCCCACTTGTTGGAAGCATTGGGCGTCCTTGCTTTCCAGGGAAGAAGCCAGCATTTTATGGTCATTATTTTCTAGATCAAAGTCGAATGCTGCAACAACGTGAAATGAAAAATGCTGTATCTACTTCACATTGCTCACAGCCCAACAATATTGAATATGATATGGCTATGGATTGGTGCTTACTACAAAAAAGAGCAGAAAAAGCATGGTCAATATTATATCAGTTTGCGGAGTATCGCAACAAGGATGAGAGCATTTCATTCGGCAACGAAATTATTTTGGTAGATCTTAAATTATGCTTCGTTGAGGCAGTGGCATGCAGTTCAGCAGTTGTGAATATTATTTTCTTGGAGTTCGGCTCCGGAACCAAGTCAAAGAACAGTTGTTCCGCCTTCTATTGCGACTCCAAGCAAGCTGATAGATTTTTTGCAAGTTTAGATCGTCTTGAAGTAAGGAAATTTAAGGGACCTACAAGTCTCAGCCACAACCCAATTGTCACCATACATTTTATTGGGTAA 1710 0.4222 METTRRRHDLHLLHPSSLQTSNFNGFAILQFALPPPQLHRRRETKLAVSVYSTIGELLHTPNISNPLQSKRNFSVRKNPMAAEEPSKLDDPEFQWGKKKGVGGKKKDVQFYSSFTYDGVEYTLYDSVYLYKEGEPEPYIGKLIKIWETADKAKKVKVLWYFRPGEIRNFLEGCEVGGNELFLACGDGVGLANLNPLEAIVGKCNVLCILKDSRNPQPSNEELHLAEFVFYRFFDVGQRKVLDKIDDMIAGFQKESPGVTPRPYVEDGPSKKLKTTEKLSKPPSDKFRKESPRVSPSEEPKLDCNVAEVTRRPDVPWEERMKTAHERGKLVLLENLDPSLTSEQVQDIIFQGFKESCTAHMIQKTACASPHSGQAFVIFKKKETADMVVKKLQEDSLLIPLVGSIGRPCFPGKKPAFYGHYFLDQSRMLQQREMKNAVSTSHCSQPNNIEYDMAMDWCLLQKRAEKAWSILYQFAEYRNKDESISFGNEIILVDLKLCFVEAVACSSAVVNIIFLEFGSGTKSKNSCSAFYCDSKQADRFFASLDRLEVRKFKGPTSLSHNPIVTIHFIG* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3020 569 PANTHER PROTEIN ANTI-SILENCING 1 84 251 - -
Amo20g3020 569 PANTHER PROTEIN ANTI-SILENCING 1 84 251 - -
Amo20g3020 569 MobiDBLite consensus disorder prediction 266 296 - -
Amo20g3020 569 MobiDBLite consensus disorder prediction 255 300 - -
Amo20g3020 569 Pfam BAH domain 120 242 IPR001025 GO:0003682
Amo20g3020 569 PANTHER PROTEIN ANTI-SILENCING 1 265 472 - -
Amo20g3020 569 Gene3D - 89 243 IPR043151 -
Amo20g3020 569 ProSiteProfiles BAH domain profile. 119 244 IPR001025 GO:0003682
Amo20g3020 569 Gene3D - 313 397 IPR012677 -
Amo20g3020 569 PANTHER PROTEIN ANTI-SILENCING 1 265 472 - -
Amo20g3020 569 SUPERFAMILY RNA-binding domain, RBD 321 393 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3020 Amo-Chr20 132931236 132943528 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3020 - - aip:107621071 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3020 20 132931236 132943528 Amo20g3020 20 132931236 132943528 ECH