Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3017 ATGGCTCCGCCGCCGGCTCACCCTCAGCGATCTCCCTCTCCCTCCCAACCTTCCGGGAAGAGTGAGGTTACTGATCTAAGATCACAACTCCGGCAACTTGCTGGGAGCCGAGCTCCTGGTGCCGATGATGCAAAGAGGGATCTCTTCAAGAAGGTGATATCCAACATGACCATAGGTATTGACGTCTCCTCTCTGTTCGGCGAGATGGTGATGTGCTCGGCTACTTCGGATATTGTTCTAAAAAAGATGTGCTATTTGTATGTTGGGAACTATGCAAAGGTCAATCCTGATCTAGCTCTTTTGACAATTAATTTTCTGCAAAGAGATTGTAAGGATGATGACCCGATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCGCTTCGGGTGGCAAACTTGGTGGAATATTTGGTTGGGCCATTAGGGTCTGGATTGAAGGATAATAATAGTTATGTAAGGACTGTGGCAGTTATTGGGGTTGTGAAATTGTATCATATATCAGCTTCCACCTGTTTGGATGCAGATTTTCCGGCAACATTGAAGCACTTGATGCTTAATGATCCGGATACTCAGGTAGTTGCGAATTGTTTGTCTGCTCTACAAGAGATTTGGACCTTAGAGTCAACCTCATCAGAGGAAGCAGCCAAGGAAAGAGAAACTCTGGTTAGCAAGCCAGTTATATATTACCTCCTGAATCGCATTAAGGAGTTTAGTGAATGGGCACAATGTCTTGTGCTTGAATTGGTAGCCAAGTATATTCCGTCAGATAACTCTGAAATATTTGATATCATGAATCTCCTTGAAGACAGACTCCAGCATGCAAATGGTGCTGTTGTGTTAGCAACCAGTAAAGTTTTTCTGCACTTGACTTTGTCAATGGCTGATGTCCATCAGCAGGTTTATGAGCGTATCAAAGCCCCTCTCTTAACTCAAGTTAGCGCAGGAAGTCCAGAGCAATCCTATGCAGTTTTAAGCCACCTGCATCTGTTGGTCATGCGTGCACCTTATATATTTTCTTCAGACTACAAGCACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTCACTGCAGTTGCAAATGAAAGTAACACCTATGACATTGTGACGGAATTATGCGAATATGCTGCAAATGTTGACATTCCAATTGCAAGGGAATCAATTCGGGCTGTGGGGAAGATAGCTTTGCAACAATATGATGTTAATGCTATTGTTGATAGGCTTCTACAGTTTCTTGAGATGGAAAAAGACTATGTTACTTGTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAAGACTGTATTGCTGTTGTTGGGAATATCAGTAGCAAAAATGTTCAGGAACCTAAGGCTAAGGCAGCTCTTATATGGATGTTGGGCGAATATTCTCAGGACATGCCTGATGCTCCATATGTATTGGAGAGTTTGGTTGAAAATTGGGACGAGGAACATTCTGCCGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGAGAGCTCCTGAAACTCAGAAAGCATTAGGGGCAGGTTTAGCTGCAGGTCTTGCTGATTTTCATCAGGACGTTCACGATAGGGCCTTATTTTACTACAGGCTCCTGCAATACAAGGTATCAGTAGCAGAGAGTGTGGTGAACCCCCCCAAGCAAGCAGTTTCAGTGTTTGCTGATTCTCAGAGCAGTGAAATCAAAGATCGCATATTTGATGAATTCAACAGCTTATCTGTTATATATCAAAAGCCTTCGTATATGTTCACTGACAAAGAACACCGAGGGACATTTGAGTTTTCAGATGAACTTGCAAACCTAACAATTAATGCAGAAGCTGGAGATTCTGCTGTTCCAGCTCAGAGAGTGGAGGCAAATGACAATGATCTGCTTCTCAGTATCACGGAAAAAGAGGAAGGTAGAGATGCTGCTAGCAATGGTTCTGCTTATAGTGCTCCTTCCTATGATGGTGCATCTGCTACTTCTGCAGCTTCACAATCGCTTGCAGATTTGGCATTTTCGAGTACCAGCGGAAGTGGCCAAGCTCCGGCATCTAGCTTCGCAATTGATGATCTCCTTGGTTTAGATTTTTCGGTTGGGGCTGCAGCCACACCTACACCTCCTCCGTTGAGTCTCAACCCAAAAGCTGTACTGGATCCAGGCACATTTCAGCAGAAATGGCGCCAACTACCACTATCCTTATCCGAAGATTTTTCCCTGAGTCCTCAAGGAGTTGCAGCTTTGGCAACTTCCAATGCACTTCTCCGGCACATGCAAAGCCATTCAATACACTGCATCGCATCCGGTGGACAGTCTCCTAACTTCAAGTTCTTTTTCTTTGCTCAAAAAGCGGAGTCAGCATCAATATATCTGGTTGAGTTATTAATCAACTCATCATCTGCCAAATCTCAGATTAAAATAAAAGCTGATGACCAAAGTACTTCTCAGGCATTCTCAACTTTATTCCAATCAGCATTGTCCAAATTCGGCACTGCTTGA 2538 0.435 MAPPPAHPQRSPSPSQPSGKSEVTDLRSQLRQLAGSRAPGADDAKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDDDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRTVAVIGVVKLYHISASTCLDADFPATLKHLMLNDPDTQVVANCLSALQEIWTLESTSSEEAAKERETLVSKPVIYYLLNRIKEFSEWAQCLVLELVAKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATSKVFLHLTLSMADVHQQVYERIKAPLLTQVSAGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYDIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTCEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMPDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRAPETQKALGAGLAAGLADFHQDVHDRALFYYRLLQYKVSVAESVVNPPKQAVSVFADSQSSEIKDRIFDEFNSLSVIYQKPSYMFTDKEHRGTFEFSDELANLTINAEAGDSAVPAQRVEANDNDLLLSITEKEEGRDAASNGSAYSAPSYDGASATSAASQSLADLAFSSTSGSGQAPASSFAIDDLLGLDFSVGAAATPTPPPLSLNPKAVLDPGTFQQKWRQLPLSLSEDFSLSPQGVAALATSNALLRHMQSHSIHCIASGGQSPNFKFFFFAQKAESASIYLVELLINSSSAKSQIKIKADDQSTSQAFSTLFQSALSKFGTA* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3017 845 MobiDBLite consensus disorder prediction 650 669 - -
Amo20g3017 845 Gene3D - 713 843 IPR012295 -
Amo20g3017 845 SUPERFAMILY ARM repeat 29 599 IPR016024 -
Amo20g3017 845 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 17 843 IPR026739 GO:0016192
Amo20g3017 845 MobiDBLite consensus disorder prediction 1 26 - -
Amo20g3017 845 Pfam Adaptin N terminal region 38 552 IPR002553 GO:0006886|GO:0016192|GO:0030117
Amo20g3017 845 Gene3D - 15 610 IPR011989 -
Amo20g3017 845 PIRSF Beta_adaptin 11 845 IPR016342 GO:0015031|GO:0030276
Amo20g3017 845 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 17 843 - -
Amo20g3017 845 SMART B2_adapt_app_C_2 723 840 IPR015151 GO:0006886|GO:0016192|GO:0030131
Amo20g3017 845 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 731 840 IPR009028 GO:0006886|GO:0016192|GO:0030117
Amo20g3017 845 Pfam Beta2-adaptin appendage, C-terminal sub-domain 726 839 IPR015151 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3017 Amo-Chr20 132804329 132812021 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3017 - - gmx:100801153 1487.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3017 20 132804329 132812021 Amo20g3017 20 132804329 132812021 ECH