Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo20g3003 | CTGTTACACACGTTTGTTAGTGGGAGCGTGGGAGGCACCTTATTACTCACTAAACCACCCACTAAAAAGTTAACCGTCATCGAATTTAGGTTCAAACAACTTCGCCAAACCCAAAACCCTACAATCTTCAGCGAAACCCTAGAAACGCTCTCTCCCGCTTCGTCTCTCTGCGTTTCAAGTTCTTGCTCATCAATGGCGACGCCCTCWTTGGACGAACAAACATCTAAGAAAGTCATTAGACAAGTTGAGTTCTACTTCAGCGACAGCAACCTTCCCACCGATAATTTCATGCGGAAAACTGTATCTGAAAGCGAAGATGGCATGGTTAGTTTGGCGTTGCTTTGTTCATTCAATAGAATGAGAAAGCACCTTAATCTTGGTGATGTGAAGGCTGATGAGATTTCGAAAGACACTGTTGCTGCTGTTGCTCAAGCTTTGAGAAGTTCTTCATCTCTCAAGGTCTCTGAAGATGGGGAAAAAGTTGGTAGGACAAAAGAACTTCCAAAACCAGAGGAGGTTATTGAGCAGGTGGAGGGAAGAACAGTTGCTGCATCCCCATTTGAATATAACTTGAAGATGGAAGATGTGGAGGCATTCTTTGGTCAACATGCCAAGGTCAATAGTGTTCGTCTGCCCCGGCATGTTGGAGACAAAAGGTTCTTCTGTGGCACCGCCCTCATTGAGTTTTCATCAGAGGAAGATGTAGAAAAAATTTTGAAACAAAAACTGGTCTATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGAATTTGATGTGGAGAGAGAAAAGGAAAAAGAAGAATTTGAAAAATCTCGTCCTCCTGTGGGCTCAAATCACCAGAATAATAACTCCAATGCAGAAGACAACTTCCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAGTTCCTTCCAACCAAGGTGGTGCTGATCAACTGGCCATTGGCAATGGCAATGGCCACAAAACAGATGGGACAAATCCCACTGAAGTTGCTGCTGGAGAAAGTGATGAAAAGGTATCAGAAAGTGCTGAGGATGACAAAGAAAATAATGAGGAGAAAGAAGGAAAGGAAACTGAAAGTGAGGAAAAAGAAGCTGAAAGTGAGGAAAAGGAAACTGAAAGTGAAGAAAAGGAAACTGAAAGTGACGAAAAGGGTCTAGAAACTGATGAAAAAATTTCACCCCCTGCTTACAAGGGTGACAAGAATGTTGTTTCGCGTGAGGATTTGAAGGTTATCTTTCAGAAGTTTGGTACTGTGAAGTTCATTGATTTCACGATTGGAGATGAGTCAGGATACATCCGGTTTGAAGAAGCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCGGTACTTACTGATAAGGGTGGCTTGCCTGTGAAGAATTTTGTTGCTATCCTAGATCCAGTGACTGGTGAGGCTGAAAGAGAATACTGGAGCCTTCTCCGCAAAAACCAAGACAAGAAGTACCGCGAGTTTAAGGGTAATCGAGGAAGGGGAGGAAGGCATGGTGGTAGAGGAGGAAAACATGCACGCTCTAGAGATAATGGATCACGAAATCGCCCAAACAAATCTCAGAAAGTTTAA | 1599 | 0.4309 | LLHTFVSGSVGGTLLLTKPPTKKLTVIEFRFKQLRQTQNPTIFSETLETLSPASSLCVSSSCSSMATPSLDEQTSKKVIRQVEFYFSDSNLPTDNFMRKTVSESEDGMVSLALLCSFNRMRKHLNLGDVKADEISKDTVAAVAQALRSSSSLKVSEDGEKVGRTKELPKPEEVIEQVEGRTVAASPFEYNLKMEDVEAFFGQHAKVNSVRLPRHVGDKRFFCGTALIEFSSEEDVEKILKQKLVYAGAELELKPKKEFDVEREKEKEEFEKSRPPVGSNHQNNNSNAEDNFPKGLIIAFKLKSISDEVPSNQGGADQLAIGNGNGHKTDGTNPTEVAAGESDEKVSESAEDDKENNEEKEGKETESEEKEAESEEKETESEEKETESDEKGLETDEKISPPAYKGDKNVVSREDLKVIFQKFGTVKFIDFTIGDESGYIRFEEAEAAQKARAAAVLTDKGGLPVKNFVAILDPVTGEAEREYWSLLRKNQDKKYREFKGNRGRGGRHGGRGGKHARSRDNGSRNRPNKSQKV* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo20g3003 | 532 | Gene3D | - | 66 | 168 | IPR036388 | - | |
| Amo20g3003 | 532 | SUPERFAMILY | RNA-binding domain, RBD | 410 | 485 | IPR035979 | GO:0003676 | |
| Amo20g3003 | 532 | Coils | Coil | 354 | 389 | - | - | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 367 | 382 | - | - | |
| Amo20g3003 | 532 | SUPERFAMILY | "Winged helix" DNA-binding domain | 70 | 170 | IPR036390 | - | |
| Amo20g3003 | 532 | ProSiteProfiles | xRRM domain profile. | 394 | 514 | IPR014886 | GO:0003723 | |
| Amo20g3003 | 532 | CDD | LA_like_plant | 74 | 163 | - | - | |
| Amo20g3003 | 532 | Pfam | RNA binding motif | 404 | 499 | IPR014886 | GO:0003723 | |
| Amo20g3003 | 532 | Gene3D | - | 402 | 501 | IPR012677 | - | |
| Amo20g3003 | 532 | Pfam | La domain | 78 | 147 | IPR006630 | - | |
| Amo20g3003 | 532 | PANTHER | OS02G0610400 PROTEIN | 67 | 532 | - | - | |
| Amo20g3003 | 532 | PANTHER | LUPUS LA PROTEIN-RELATED | 67 | 532 | IPR045180 | - | |
| Amo20g3003 | 532 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 180 | 265 | IPR000504 | GO:0003723 | |
| Amo20g3003 | 532 | SMART | rrm1_1 | 407 | 472 | IPR000504 | GO:0003723 | |
| Amo20g3003 | 532 | SMART | rrm1_1 | 181 | 253 | IPR000504 | GO:0003723 | |
| Amo20g3003 | 532 | ProSiteProfiles | La-type HTH domain profile. | 68 | 171 | IPR006630 | - | |
| Amo20g3003 | 532 | Gene3D | - | 170 | 264 | IPR012677 | - | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 340 | 366 | - | - | |
| Amo20g3003 | 532 | PRINTS | Lupus La protein signature | 81 | 98 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Amo20g3003 | 532 | PRINTS | Lupus La protein signature | 107 | 122 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Amo20g3003 | 532 | PRINTS | Lupus La protein signature | 221 | 239 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 494 | 532 | - | - | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 259 | 274 | - | - | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 275 | 289 | - | - | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 308 | 335 | - | - | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 383 | 410 | - | - | |
| Amo20g3003 | 532 | SMART | la | 72 | 164 | IPR006630 | - | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 308 | 410 | - | - | |
| Amo20g3003 | 532 | CDD | RRM1_La | 181 | 253 | - | - | |
| Amo20g3003 | 532 | SUPERFAMILY | RNA-binding domain, RBD | 171 | 255 | IPR035979 | GO:0003676 | |
| Amo20g3003 | 532 | MobiDBLite | consensus disorder prediction | 259 | 289 | - | - | |
| Amo20g3003 | 532 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 241 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo20g3003 | Amo-Chr20 | 132489414 | 132493172 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo20g3003 | K11090 | - | gmx:100786016 | 551.206 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo20g3003 | 20 | 132489414 | 132493172 | Amo20g3003 | 20 | 132489414 | 132493172 | ECH |