Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3000 ATGCGCCCACCGGTTATTTTCCAAACTATCCCTTTTTTTTCTTCTTCTTCTAGTGATCGCAGGCTTAACACACTCGCAAAGCACTTTCTACAAACCGAATCTGAGAACAATCAAAACATGTCAGCTTCACCAACTTCTTCTCATGGCGATTCCGTCTTTGCTCATCTCGTTCGCGCTCCCGAAGATCCTATTCTCGGTGTGACTCTCGCTTACAATAAGGATCCAAGCCCTGTTAAGCTCAACTTAGGTGTTGGTGCTTACAGAACTGAGGAAGGGAAACCTCTCGTGTTGAATGTGGTGAGGCGTGTGGAACAGGAACTCGTCAGTAACCCGGCACGCAACAAGGAGTATCTTCCTATTACTGGAGTAGCTGATTTTAATAAACTCAGTGCTCAGCTCATTTTTGGTGCTGACAGCCCTGCAATTCAAGAGAGCAGAGTAACCACCGTTCAATGCTTGTCTGGTACTGGTTCATTGAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGAAATATATATTTGCCTCAACCAACATGGGGAAACCACCCAAAGGTTTTTACCCTGGCAGGGCTAACTGTCCAAACGTATCGCTACTATGCTCCAGCAACTCGTGGGCTTGATTTCCAAGGACTAATGGAAGATCTTGGTGCTGTCCCATCTGGATCAGTTATTATGCTACATGCATGTGCACATAATCCTACTGGTGTTGATCCAACCCCTGAACAATGGGAGGAGATTAGGAAGCTGATCAGATCAAAAGCCTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTGGATAAAGATGCACAGCCTGTTCGTTCTTTTGTTGCTGATGGGGGTGAATTGTTGGTAGCCCAGAGTTATGCAAAGAACATGGGTCTTTATGGTGAACGTGTTGGCGCCTTAAGCATTGTGTGCAAGTCAGCTGATGTTGCAAGCAAAGTTGAGAGTCAGCTGAAACTTGTGATTAGGCCCATGTACTCAAATCCTCCCATTCATGGTGCAACCATTGTGGCTGCAGTTCTCAAGGACAGTGATTTGTTCAATGAGTGGACTATTGAGTTGAAGGAAATGGCAGACCGAATAATCAGTATGCGCCAACAACTTTTTGATGCTTTACACGCCAGAGGTACTCCAGGTGATTGGAGTCACATTATCAAGCAGATTGGAATGTTCACCTTCACAGGATTGAATTCTGAACAAGTTTCCTTTATGACTAGAGAGTACCACATATACATGACATCTGATGGGAGGATTAGTATGGCTGGTCTTAGTTCCAAAACAGTCCCTCATCTGGCGGATGCAATTCATGCAGCTGTCACCAAAGCTGTGTAG 1362 0.4501 MRPPVIFQTIPFFSSSSSDRRLNTLAKHFLQTESENNQNMSASPTSSHGDSVFAHLVRAPEDPILGVTLAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQELVSNPARNKEYLPITGVADFNKLSAQLIFGADSPAIQESRVTTVQCLSGTGSLRVGGEFLAKHYHQRNIYLPQPTWGNHPKVFTLAGLTVQTYRYYAPATRGLDFQGLMEDLGAVPSGSVIMLHACAHNPTGVDPTPEQWEEIRKLIRSKALLPFFDSAYQGFASGSLDKDAQPVRSFVADGGELLVAQSYAKNMGLYGERVGALSIVCKSADVASKVESQLKLVIRPMYSNPPIHGATIVAAVLKDSDLFNEWTIELKEMADRIISMRQQLFDALHARGTPGDWSHIIKQIGMFTFTGLNSEQVSFMTREYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTKAV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3000 453 Pfam Aminotransferase class I and II 79 445 IPR004839 GO:0009058|GO:0030170
Amo20g3000 453 SUPERFAMILY PLP-dependent transferases 51 449 IPR015424 -
Amo20g3000 453 PANTHER ASPARTATE AMINOTRANSFERASE 50 451 - -
Amo20g3000 453 Gene3D Aspartate Aminotransferase, domain 1 58 445 IPR015422 GO:0003824
Amo20g3000 453 Gene3D - 112 353 IPR015421 GO:0003824
Amo20g3000 453 CDD AAT_like 80 433 - -
Amo20g3000 453 PRINTS Aspartate aminotransferase signature 227 246 IPR000796 GO:0006520|GO:0008483
Amo20g3000 453 PRINTS Aspartate aminotransferase signature 394 412 IPR000796 GO:0006520|GO:0008483
Amo20g3000 453 PRINTS Aspartate aminotransferase signature 258 270 IPR000796 GO:0006520|GO:0008483
Amo20g3000 453 PRINTS Aspartate aminotransferase signature 326 351 IPR000796 GO:0006520|GO:0008483
Amo20g3000 453 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 296 309 IPR004838 GO:0003824|GO:0009058|GO:0030170
Amo20g3000 453 PANTHER ASPARTATE AMINOTRANSFERASE 50 451 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3000 Amo-Chr20 132418848 132423289 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3000 K14454 - gmx:547509 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3000 20 132418848 132423289 Amo20g3000 20 132418848 132423289 ECH