Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2921 ATGAAAGTGAGCTCTACAAATTCCAAATGCTCAATTCATCAGCTAGAGAACATAGATGAGAATGCAGCTTCAGAATGCACACTATCATCATCATGTCCACCACCTGAGACTCCAACAGAGTCTATGGAGTTTCTTGCAAGATCATGGAGTCTCTCGGCAATGGAACTCTCCAAAGCACTTCACTATAACACTAACATCAAGCCTTCCACAACTTCTGCTGAGAACAAGGATTCTTTACTTAATGGATGTTGTCCTCAGATTTTGCCAAAAGATAGTGATGAAACTAAGGACTTATTTTTACTCCATCAAGCAATCAATCCAGAATTCCTTTCCAGTCAAAACTTGCTCAGAAATGGGCTTTACAAGAGTTTGCTGAGAGGAAGGACAATGGGAAGATGGCTGAAGGATCAAAAGGAGAGGAAGAAGCAGGAAATTAGGACTCATAATGCTCAGTTGCATGCTGCAGTATCCGTGGCAGGCGTAGCTGCTGCCGTTGCGGCCATTGCAGCTTCAATGGCATCATCACAAGAAGTGCCTAATGCCGGCCAAAAAAACAATCCCATCAGTTCTGCCACGATTGCATCGGCAGCAGCCTTGGTTGCCTCTCACTGCATTGAGATTGCTGAGGATATGGGAGCTGAACATGAACAAATCTTAACTGTAGTTAACTCTGCCATTAATGCAAAAACCAATGGAGATATGATGACTTTAACAGCTGGAGCGGCCACAGCGTTGCGAGGAGCTGCTACTCTAAAGGCAAGACTGCAGAAGGGGGTTGGAGCGACGACGTTCCCTCTAGTCGATGAAAAATGCAAGGAAGGAAGAGAAGCAAACATCTTGCTGGCACTGGACTCTGTTTTCAAAGGAGGGGAGATTCTAAAGCGTACAAGAAAAGGAGATCTTCACTGGAAGCAAGTATCTTTCAATATGAATTCAAATTTACAGGTTATAGCGAAAATGAAGAGCAAGCACATGGCAGGAACATTCACCAAAAAGAAGAAATGTATAGTCACCGGAGTCTGCAGTGATGTCCAAGCTTGGCCGGGAAGAGAGAAGGAAGACTTAATAGAAAAGAGGGCATATTTTGGAATTAAAACTGCAGAAAGGATAATAGAGTTTGAATGTGAGAGTAAAAGAGACAAACAGTTCTGGCTTGATGGGATCCAGTATATGTTGAATTGCCGCGCCAAAGCGGCATAA 1200 0.4358 MKVSSTNSKCSIHQLENIDENAASECTLSSSCPPPETPTESMEFLARSWSLSAMELSKALHYNTNIKPSTTSAENKDSLLNGCCPQILPKDSDETKDLFLLHQAINPEFLSSQNLLRNGLYKSLLRGRTMGRWLKDQKERKKQEIRTHNAQLHAAVSVAGVAAAVAAIAASMASSQEVPNAGQKNNPISSATIASAAALVASHCIEIAEDMGAEHEQILTVVNSAINAKTNGDMMTLTAGAATALRGAATLKARLQKGVGATTFPLVDEKCKEGREANILLALDSVFKGGEILKRTRKGDLHWKQVSFNMNSNLQVIAKMKSKHMAGTFTKKKKCIVTGVCSDVQAWPGREKEDLIEKRAYFGIKTAERIIEFECESKRDKQFWLDGIQYMLNCRAKAA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2921 399 PANTHER EXPRESSED PROTEIN 8 397 IPR040269 -
Amo20g2921 399 Pfam Plant pleckstrin homology-like region 291 395 IPR013666 -
Amo20g2921 399 Pfam Auxin canalisation 35 70 IPR008546 -
Amo20g2921 399 Pfam Auxin canalisation 68 263 IPR008546 -
Amo20g2921 399 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 8 397 - -
Amo20g2921 399 ProSiteProfiles PH domain profile. 285 393 IPR001849 -
Amo20g2921 399 SUPERFAMILY PH domain-like 286 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2921 Amo-Chr20 130870721 130873486 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2921 - - gmx:100814154 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2421 10 84795839 84798551 Amo20g2921 20 130870721 130873486 hybridization