Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2898 ATGGCGACTTCTTCTTTTTATAAACCATTATTTCTGGTAAAGTGCTCCATCGAGAAAAGACCTTCCTATGTCTCACACAAAAATTCTCATCATAATCACTTCAATATACCAATTGCTTCTGCTTTTAAGAAAATGACGATGATTGGTTTGCCGGAATTCCCAAAAATTGTGGCAACTTCTGCTGTTAGATTGGTTGATGCTTTTGTGGATTCATTCTTTGAATTCATTGATCAGCCATTGCTTCCATCTCAGAAGCAGAATAACTTTGCTCCCGTGGAGGAGTTGGGAGAAACAATGGTTGTGACTAACAACATCGATGGCCATATTCCGAATGGTTTTCCTGAGGGTGGTACAAGGAACCTCCCGATAACTTCGTTGGTGAAGTCCACATACGGAAGGCTTGCTGAGCTATTTGTGGTCCGAGGACAAATGGCGGAGGCACAAATGGGGACTGGGCATGAATTTTGTCAGGCGTTGGGATCACACATGCGACTGTGGCTACTTTCAAGCTCTGCATTACCCATGTTGTCACGCCATTGCATGTTGCGCCCACTCGCGTGTTCAAAGTGTACAAGGAAGGGTTTGCCCCCTATCCCAAAAGGACTCTGGCCGCCATATGTTGGTCCGACTGTCATTCCAGACCCTAAAATGAGGCATGCAAGAGATGGACGGCCAAAGTTAACCAGAATCCGGGGTATCATGGATCAGACTGCTCCAAACCAACCGAAGCGCTGTGGGCTCTGCCGTCAACCTGGACCAAATCCGCTATTTGGAGGACTGAAATCAACAAATTCAATATTTGGAAAGACAAGTCACGTATGGGTGGAAGGAGAGGGAATGCTTCATGCATTGCACGTTGAAACTGAGACCTACAAGCTTGAAAAACAAAGGAACAAACCATCATTTTTGCCGGCCATTCAAGGCGATTCACTTGCCATTTTGTTTGCATACCTCTTAAATTTGTTGAGATTTGGCAAAGTAAACAAATACATTAGCAACACCAATGTGTTTGAGCATTCAGGCAAGTTTTATTCCGTGGCTGAAAGTCACATCCCACAAGAGATTGACATCTTTACCCTCAAAACCTTAAGGAATTGGGATGTCAATGGAGCCTGGAATAGACCCTTTTGCAGCCACCCAAAGAAAGCCCCAGGTACAGGGGAGCTTGTCACATTAGGAATATCTCCAATTTTACCTTTTTGTGAACTTGGAATAATTTCTGCTGATGGGAAAAAATTGGATCACAAAGTTGATCTCAAACTGAACAGGTGCACCCTTTGCCATGAACTAGGTGTTACACAGAGGTACAATGTAATCATGGATTTTCCACTGACCATTGATCTACTCAGACTTGTTAAAGGAGAGCAACTAATAAGGTATGATAAAGATGAATATGCAAGAATTGGTGTTATGCCACGCTATGGCGATGCAAGCTCAATCAAGTGGTTTGAAGTGGAGCCTAATTGCACCTTCCATATCATCAATTCTTTTGAGGAGGGTCATGAGGTTGTAGTAAGAGGCTGCAGATCTCTTGATTCATTGATTCCTGGACCTCATCCGAGTTCGAGTTCGAATGAACTCGATTGTCTGTCTCGTTGTTACGAATGGCGATTGAACATGGAAACAGGGGAAGTTAAGGAGAGAAGTCTGATCGGACCCAAAGTAGTGTATATGGATTTTCCTATGGTCAATGAAAACTTCATGGGTATCAAGAATAGATATGCATACACACAAGTAGTTGATCCCCTTGCAAGCTCTACACAAGATGTGCCAAAATATGGAGGTCTAGCAAAGCTCTACTTCGAAGAATCATCGAGTGAAAAGTTATTTATGGGAGACAAACAACATGATGAAGATCCAATAAGGGTTGAATACCATATGTTTGAGAAGAACACATTTTGCAGTGGAGCTGCTTTTGTACCGAAAGATGGTGGTGTAGAAGAAGATGATGGTTGGATTATCAGTTTTGTTCATAACGAAGATGATGCCATATCTCAAGTTCATATAATTGATGGAAAGAAGTTAAGTGGTGAGGCAGTTGCCAAGATTACATTGCCATGCAGAATTCCTTACGGTTTCCATGGAGCTTTCATGCCAATCTCTTTTCAGGCGTCTCACTAG 2121 0.4272 MATSSFYKPLFLVKCSIEKRPSYVSHKNSHHNHFNIPIASAFKKMTMIGLPEFPKIVATSAVRLVDAFVDSFFEFIDQPLLPSQKQNNFAPVEELGETMVVTNNIDGHIPNGFPEGGTRNLPITSLVKSTYGRLAELFVVRGQMAEAQMGTGHEFCQALGSHMRLWLLSSSALPMLSRHCMLRPLACSKCTRKGLPPIPKGLWPPYVGPTVIPDPKMRHARDGRPKLTRIRGIMDQTAPNQPKRCGLCRQPGPNPLFGGLKSTNSIFGKTSHVWVEGEGMLHALHVETETYKLEKQRNKPSFLPAIQGDSLAILFAYLLNLLRFGKVNKYISNTNVFEHSGKFYSVAESHIPQEIDIFTLKTLRNWDVNGAWNRPFCSHPKKAPGTGELVTLGISPILPFCELGIISADGKKLDHKVDLKLNRCTLCHELGVTQRYNVIMDFPLTIDLLRLVKGEQLIRYDKDEYARIGVMPRYGDASSIKWFEVEPNCTFHIINSFEEGHEVVVRGCRSLDSLIPGPHPSSSSNELDCLSRCYEWRLNMETGEVKERSLIGPKVVYMDFPMVNENFMGIKNRYAYTQVVDPLASSTQDVPKYGGLAKLYFEESSSEKLFMGDKQHDEDPIRVEYHMFEKNTFCSGAAFVPKDGGVEEDDGWIISFVHNEDDAISQVHIIDGKKLSGEAVAKITLPCRIPYGFHGAFMPISFQASH* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2898 706 PANTHER OS06G0162550 PROTEIN 47 137 - -
Amo20g2898 706 Pfam Retinal pigment epithelial membrane protein 252 699 IPR004294 GO:0016702
Amo20g2898 706 PANTHER BETA-CAROTENE DIOXYGENASE 251 700 IPR004294 GO:0016702
Amo20g2898 706 PANTHER OS06G0162550 PROTEIN 251 700 - -
Amo20g2898 706 PANTHER BETA-CAROTENE DIOXYGENASE 47 137 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2898 Amo-Chr20 130215834 130225808 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2898 - - ahf:112717820 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2898 20 130215834 130225808 Amo20g2898 20 130215834 130225808 ECH