Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2854 ATGGTTCGTTTCGTCCTAAAATCCACTGAACCTGGGGAACAGCAACAGCAAAAGCAAAAGGGAGAATGGCTAGCAGGGAGTTTCAAGCCAGAGAACTTTGTTCCGGGTCTTGTTATTGGTTTCATTTTTGGGTTGTTGTTGGACTTGACAAAGCCCGGTAAATTTCATCTTCCCAAGAAAAATTTCTCATCTGGCAAGGCTCAACACCAATTGTCAGTATCTAGTAATGGTGATCAAGACCTGAAAATGGTGCTAGTTGTAAGGCAAGACCTAAAGATGAAATCTGGAAAGATTGCGTCGCAATGTGCTCATGCTGCCACTGGCATGTATGCTGAATTAATCCACAGCAACCGTTCACTTTTGAGACAATGGGAAAGCTGCGGCCAGCCAAAAATTGTTGTGACTTGCAGGAATCAACAAGAAATGAATAAGCTGAAGGACACAGCTGATAGTATTGGCCTTCCAACCTTTGTTGTTGCTGACGCTGGGCGAACACAGGTTTCGGCAGGATCAAAGACTGTTCTTGCTGTTGGACCTGGACCAAAATCATATGTAGATTCAGTGACTGGGAAGTTGCCCCTACTTTAA 588 0.4422 MVRFVLKSTEPGEQQQQKQKGEWLAGSFKPENFVPGLVIGFIFGLLLDLTKPGKFHLPKKNFSSGKAQHQLSVSSNGDQDLKMVLVVRQDLKMKSGKIASQCAHAATGMYAELIHSNRSLLRQWESCGQPKIVVTCRNQQEMNKLKDTADSIGLPTFVVADAGRTQVSAGSKTVLAVGPGPKSYVDSVTGKLPLL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2854 195 PANTHER PEPTIDYL-TRNA HYDROLASE 2, MITOCHONDRIAL 11 195 - -
Amo20g2854 195 PANTHER PEPTIDYL-TRNA HYDROLASE 2 11 195 IPR002833 GO:0004045
Amo20g2854 195 MobiDBLite consensus disorder prediction 1 21 - -
Amo20g2854 195 CDD PTH2 82 195 IPR002833 GO:0004045
Amo20g2854 195 Pfam Peptidyl-tRNA hydrolase PTH2 81 195 IPR002833 GO:0004045
Amo20g2854 195 Gene3D Bit1 79 195 IPR023476 -
Amo20g2854 195 SUPERFAMILY Peptidyl-tRNA hydrolase II 80 195 IPR023476 -
Amo20g2854 195 TIGRFAM arch_pth2: peptidyl-tRNA hydrolase 81 195 IPR002833 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2854 Amo-Chr20 129314033 129317394 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2854 K04794 - gmx:100527852 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2854 20 129314033 129317394 Amo20g2854 20 129314033 129317394 ECH
Amo10g2374 10 82910129 82913466 Amo20g2854 20 129314033 129317394 hybridization