Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2808 ATGATAGCTTGCGCGGAGCACTTCCTGCCGGGAAATGACGCCGAACCGAAGCCCGACGACGACGTCGTTTCCAGCCTCTCCAAAACGCTTGGCGTTCAAGCCATCACCACCGACGACTTGGGAATAGCAAGCAAGGACTTCGGCGGCTTGAAATTCGTGAAGCCTTTGGCACTCGTAAGGCCCTACACCGCAGACGACGTTGCTCGGGTGGTGAGAGCGGCAGCAAGGTCTCCGACTCTGACGGTGGCGGCACGAGGGAACGGCCACTCCATCAACGGTCAGGCCATGGCGGAGCATGGTCTCGTCCTCGACATGCGCTCCATGGACGAACTTGTCCAGCTCGTGAGGATTAACGGCGCACCATACGTCGACGTTTCGGGAGGGGCATTATGGGAAGACGTCCTGAAACGCTGCGTTTCGGAGTTCGGTTTGGCCCCGCGCTCCTGGACGGATTACCTCAGCTTAACGGTTGGCGGAACGCTGTCATATGCAGGCGTGAGCGGCCAAGCGTTCCGTTACGGCCCGCAGACTTCTAACGTAACGGAATTGGAGGTGGTTACGGGGAAAGGAGAAACCATAGTATGCTCAAAAACGCAAAGTCCAGAGCTTTTCTTTGCAGTTCTTGGGGGTCTAGGTCAGTTCGGTATCATAACTAGGGCCAGGATTGTACTTCAGGAAGCTCCACATACGGTGAGATGGATAAGGGTAGTTTACAGCGAATTTGAGGAGTTCAGTAGCGATGCAGAGTGGCTGGTGAGAAGAGAAGAAGGTGAATCGTGTTTTGACTACGTGGAAGGGTTCGTTTTTGTGAACAGTGACGACCCCTCCAACGGGTGGCCCACTTTGCCATTGGACCCTCAACAAGTGTTCGACCCCATTCATATTCCTCCCTCTGCCGGTCCTGTTCTCTATTGCTTGGAGCTCGCTCTTCACTATCGTCACTCAGACCACCCTTCCCGTGTTGATGCGGTTGTTGATGGATTGCTTGGACGGCTACGATTCATCAAGGGTCTCAAGTTCCAGGTGGACATGGGATACACGGAGTTCTTGCTACGTGTAAAGCGTGACGAGGAGCATGCGAAAATCAACGGCGTTTGGGATGCGCCACACCCTTGGCTGAACCTGTTCGTTTCAAAGTCCAATATCGCCGAGTTCGATAGCGAGGTGTTCAAGAAGATCCTCAAGGACGGTGTCAATGGCCCCATCTTAGTTTACCCTCTCTTGAGAAACAAGTGGGATAGTAGACAATCGGTGGTGGTGCCAGAGAGTGACATATTCTACATAGTAGCATTGCTGAGGTTTAGTCCAGCACCACCAAAGGGACCATCGCCTCAACTCTTGGTGGAACAGAACCGTCAGATTCTTCAGCTTTGCTTAGCCAAAGCCTTTGATTTCAAGCTATACTTCCCTCACTACCACTCACGACAAGATTGGATCAACCACTTTGGTAATCATCAATGGTCCCGATTCGTTGAAAGAAAGACCGCTTTTGATCCCATGGCTATCCTTGCTCCTGGACAGAAAATTTTCTCCAGAGTCCCTCAACCTTATTCTCTCACACAATAA 1566 0.523 MIACAEHFLPGNDAEPKPDDDVVSSLSKTLGVQAITTDDLGIASKDFGGLKFVKPLALVRPYTADDVARVVRAAARSPTLTVAARGNGHSINGQAMAEHGLVLDMRSMDELVQLVRINGAPYVDVSGGALWEDVLKRCVSEFGLAPRSWTDYLSLTVGGTLSYAGVSGQAFRYGPQTSNVTELEVVTGKGETIVCSKTQSPELFFAVLGGLGQFGIITRARIVLQEAPHTVRWIRVVYSEFEEFSSDAEWLVRREEGESCFDYVEGFVFVNSDDPSNGWPTLPLDPQQVFDPIHIPPSAGPVLYCLELALHYRHSDHPSRVDAVVDGLLGRLRFIKGLKFQVDMGYTEFLLRVKRDEEHAKINGVWDAPHPWLNLFVSKSNIAEFDSEVFKKILKDGVNGPILVYPLLRNKWDSRQSVVVPESDIFYIVALLRFSPAPPKGPSPQLLVEQNRQILQLCLAKAFDFKLYFPHYHSRQDWINHFGNHQWSRFVERKTAFDPMAILAPGQKIFSRVPQPYSLTQ* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2808 521 Gene3D - 43 511 IPR016167 -
Amo20g2808 521 PANTHER CYTOKININ DEHYDROGENASE 7 12 515 - -
Amo20g2808 521 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 228 510 IPR015345 GO:0009690|GO:0019139|GO:0050660
Amo20g2808 521 SUPERFAMILY FAD-linked oxidases, C-terminal domain 228 510 IPR016164 GO:0003824|GO:0050660
Amo20g2808 521 Pfam FAD binding domain 55 196 IPR006094 GO:0050660
Amo20g2808 521 Gene3D - 231 468 IPR016170 -
Amo20g2808 521 PANTHER GULONOLACTONE OXIDASE 12 515 - -
Amo20g2808 521 Gene3D - 105 229 IPR016169 -
Amo20g2808 521 SUPERFAMILY FAD-binding/transporter-associated domain-like 39 225 IPR036318 GO:0050660
Amo20g2808 521 ProSiteProfiles PCMH-type FAD-binding domain profile. 51 227 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2808 Amo-Chr20 127377491 127380717 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2808 K00279 - gmx:100795849 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2808 20 127377491 127380717 Amo20g2808 20 127377491 127380717 ECH