Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2782 ATGCAAAGAAACAAGTCACTTTGTGTTTGCCCCATTTTGAGTACTCTTCAATCTAGTGTCTTATTCGTGATGGGTAGCAGTACTACTACACAAAGATCACATTGTTGGCATTATTGGGGCATCATTGTAGCATGGCTTACATTGTTGGAAATGAAGATGATGGTGCATTATGTGAATGGTGAACTCAATTACAAGGAGGCTCTCACCAAGTCATTAATATTTCTAGAGGCACAAAGATCAGGAAAACTCCCTTCCAATAACAGGGTACCTTGGAGAGAAGACTCAGCCCTAGATGATGGAAAACTAGCTAATGTGGACCTTGTTGGAGGTTACTATGATGCTGGGGATAATGTAAAATATGGCCTCCCAATGGCTTTTACTATTACAACCCTATCATGGGCTGCAATTTTTTACAAATCAGAATTAGAAGCTACAAAGGAAATGGGGAATGTTCATGATGCCATTAGATGGGGCACTGATTATTTTCTCAAAGCTAGTTCTAGACGCAAAAGATTATATGTCCAGGTAGGGGACCCGGAAGAGGATCACCATTGTTGGGTTCGACCGGAAAATATGAAGACAAAAAGAACGGTTTTGAAGATTGATAGTAACACGCCAGGGACTGAGATTGCAGCTGAAACCGCCGCGGCAATGGCGGCTGCTTCTATCGTTTTTAGGGACTCTGATCGTAAATATTCACATAGTCTCCTAAACAAAGCGAAATCGCTTTTTGTGTTTTCGAAATCACACAAAGGAACCTATGATGGAGAGTGTCCCTTCTACTGCTCTTACTCAGGCTATAATGATGAACTTATGTGGGCAGCAACATGGTTATACATGGCTACGAGGAAGCCTGCGTATTTGAAGTACATAGAAGAAGAATCGATAAGTGCTAGCGTAACAGAATTTAATTGGGATCTTAAATATGCAGGAGCCCAAATCCTTCTTACCAAGTTACATTTTGAAGGAACAAAGAATTTGGACACATTCAAAGTTCATGCCGAAAGTTTCATATGTTCAGTTCATCCGGAAAGTCCCTATCATCAAATTAACTTATCCCCTGGTGGGTTCGTTCATTTGAGAGATGGTGCCAACACACAATATGCTACCGGGGCAGCATTGTTGTTCACTATGGATTATATACTAGGGAAGAACCCTGAAGGAAGATCATACATGGTAGGGTTTGGGAAGAACCCACCAACACAAGCTCACCATAGAGGTGCATCCATGCAAAAGTTGCCAAAGGATGAAGAAGTAAACTGTCCCACGAGCTTCTCAAAATGGTTGAATAAAGACCAACCTAACCCCAATGAGCTCACCGGTGCTATTCTTGGTGGACCTGACGGCAATGACAAGTTCAAAGACAAGCGTTGGGAATCTGTTTACACTGAGCCATGCACATACATTAATTCTCTAGCAGTTGGACCTTTAGCCAAGCTTGCATCTTTGTCTTAA 1455 0.4186 MQRNKSLCVCPILSTLQSSVLFVMGSSTTTQRSHCWHYWGIIVAWLTLLEMKMMVHYVNGELNYKEALTKSLIFLEAQRSGKLPSNNRVPWREDSALDDGKLANVDLVGGYYDAGDNVKYGLPMAFTITTLSWAAIFYKSELEATKEMGNVHDAIRWGTDYFLKASSRRKRLYVQVGDPEEDHHCWVRPENMKTKRTVLKIDSNTPGTEIAAETAAAMAAASIVFRDSDRKYSHSLLNKAKSLFVFSKSHKGTYDGECPFYCSYSGYNDELMWAATWLYMATRKPAYLKYIEEESISASVTEFNWDLKYAGAQILLTKLHFEGTKNLDTFKVHAESFICSVHPESPYHQINLSPGGFVHLRDGANTQYATGAALLFTMDYILGKNPEGRSYMVGFGKNPPTQAHHRGASMQKLPKDEEVNCPTSFSKWLNKDQPNPNELTGAILGGPDGNDKFKDKRWESVYTEPCTYINSLAVGPLAKLASLS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2782 484 PANTHER ENDOGLUCANASE 16-RELATED 41 377 - -
Amo20g2782 484 Pfam Glycosyl hydrolase family 9 64 475 IPR001701 GO:0004553|GO:0005975
Amo20g2782 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 380 406 IPR018221 -
Amo20g2782 484 PANTHER ENDO-1,4-BETA-GLUCANASE 41 377 - -
Amo20g2782 484 PANTHER ENDO-1,4-BETA-GLUCANASE 378 481 - -
Amo20g2782 484 Gene3D - 61 484 IPR012341 GO:0005975
Amo20g2782 484 PANTHER ENDOGLUCANASE 16-RELATED 378 481 - -
Amo20g2782 484 SUPERFAMILY Six-hairpin glycosidases 62 482 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2782 Amo-Chr20 126853372 126855549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2782 58 482 Glycoside Hydrolase AT3G43860 67.467 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2782 K01179 - gmx:100811509 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2782 20 126853372 126855549 Amo20g2782 20 126853372 126855549 ECH
Amo10g2331 10 81487814 81489973 Amo20g2782 20 126853372 126855549 hybridization