Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2768 ATGAACTTGTCCAAGAAAGTATCCCAAACGGATGCAAAGCTAAGCAGCCCAAGCAAGGCAACCACTTTGAATCCAAATGCAGCAGAGTTTATTCCTTTTTCTCTCAGAACACCATTTTCTGGAACCACCAGCTCGGTTGATGCAACAGCAAGGCTGGCCAATGCTGGAGCTCTTGGAAAAGCCGTTTTAGATAGATCAGAATCATCCATTTCAAACAATTCAGAAGATGAGGTTCACCAATACTGGCGATGTCAGCTCCCTGATGATATAACCCCTGATTTCAAGGTYGTGGGAGAAGAGTCCCAAGGTCTTAATGACCTYTCTTTAGCAGGCTTATCCATACATGATGACATTGAAGGCTTGATGTTTCATTCYTCTAAAGGAAGTAGATATATATTCAATGAGCAGGAAGAATTATCTCAGCAGCACATTAATGGCAATAACTTTACTGATAGACTAAGGTTTTCCAATTCTRGCTTTCGGGAGGATCCATCTTCAGGAAGCACTTTGAACACTTCAGCGAATCCTTGGGATAGGCCAATTGGGAGTGCCAACAAGCTTGTTAGCAGTGGTCAAGAGGGGCTTACTTATGATGACAACTCAGGACATGGATTCTTAAATGACATCTTTGCTGAGAATGCAATCGTGGATGATACTAATTTGAACCCTTTGGAGTTTTTAGCTTCTCTGTTCCCTGGTTTTGCTGCAGAAAGCCTTGCAGAGGTTTACTTTGCCAATGGATGTGATTTGCATATGACCATTGAGATGCTCACACAGGAAGAGCCGGCTCCCCATAAAGTTGAGGTGATTCAAGTGCAACCTAGCTTCCAGTTTCTATTCGCTGTTTGCCTGCTCCAAGTTGATGGTAGTTTCATTCAGAATCTGAATTCAAAGACGCTGTCAGCTCCCAATCTTAGTGCAATGGACTTCCCTGCACTTACATCACCGGATGGTCATACTGCTTCTGTCAGATTTTCTGTAGATAATGTCCAACAAAGTGGCAACCCTTACCGATCATCTGACAAAGACATTCTGTCTTTCAAAACTACCTCTTCAATTCCGTCTAGAGGTGCTATTGACTTTGCTTCAGCTGTGAGGAAGCTGGCTTCTCAGGACTCTGGTATTTGGAAGTATGATAAAAGTGGTTCTGGTGATGCTGCCATTGGCTCAAGCAGGACATCTCATGTTTTGGCTGGCTATGATGGTGGACAAGGGAGGGCCAGCTTCAGTGACAGGTTACAGAATCGTGGCTTAGCTCGGGGGTTAGCACCTGTTTGGCTTGAAACTGGTGACACAGTTGCAAATATGTACTCAGAACTGAGGGAGGAGGCCCGTGATCATGCACGCTTACGTAATGCATACTTTGAGCAGGCACGGCAAGCCTATCTTATTGGCAATAAAGCCCTGGCAAAGGAACTTAGTGCTAAAGGGCAAGTGCACAACATGCATATGAAAGCAGCTCATGGAAAAGCACAAGAGTCTATATATCGCCAGAGGAATCCAGTTGCTCCGGAGATGCAGGGCAATGGAAGAGGGCATGAGAGGATGATAGACTTRCATGGGTTGCATGTGAGTGAAGCKATTCATGTGTTGAAATACGAACTGARTGTGCTGAAAAACACGGCCAGAGCCGCCGATCAGCGCCTGCAGGTCTACATTTGTGTGGGGACAGGTCATCATACGAGGGGTTCCCGTACTCCTGCAAGACTTCCGATAGCTGTACAGCGTTTTTTACTCGAAGAAGGACTTGATTTCACAGAACCTCAGCCAGGCCTACTTCGTGTTGGTTTGGGTGAGACTAGCCGGACATGTGCAGTTACTTTAATAATGAACTTGTCCAAGAAAGTATCCCAAACGGATGCAAAGCTAAGCAGCCCAAACAAGGCAACCACTTTGAATCCAAATGCAGCAGAGTTTGTTCCTTTTTCTCTCAGAACATCGTTCTCTGGAACTGCCAGCTCGGTTGATGCAACAGCAAGGCTTGCCAATGCTGGGGCTCTTGGAAAAGCAGTTTTAGATCGGTCAGAATCATCCATTTCAAACAATTCCGATGATGAGGTTCACCAATACTGGCGATGTCAGCTCCCTGATGATATAACCCCTGATTTCAAGGTCGCRGGAGAAGATGTATCCCAAGATGTTAATGACCTTTCTTTAGCTGGCTTATCTATGCATGATGACATTGARGGCTTGAGGTTTGCCTCATCTAAAGGAAGTAGATATATATTAAATGAGCAGGAGGAATTATCTCAGCAGCACATTAATGGCAACAGTTTTACTGATAGATTAAGGTTTTCCAATTCTAGCTTTAGGGAGGACCCATCTTCAGCAAGCTTTTTGAACACTTCAACAAATCCATGGGATAGGCCAATTGGGAATGCCAACCAGTTTGTTAGCAGTGGTCAAGAGGGGCTTACTTATGATGACAACTCAAGACATGGATTTTTSAATGACATCTTTTCTGAGAATGCAATCGTGAATGATACTAATTTGAACCCCTTGGAGTTTCTGGCTTCTCTGTTCCCTGGTTTTGCGGCAGAAAGCCTTGCGGAAGTTTACTTTGCCAATGGATGTGATTTGCATATGACCATAGAGATGCTCACTCAGTTAGAGAATCTGAGTTCTAAGACTCTGTCAGCTCCCAATCTCAGTGCAATGGATTTTCCTGCACTTACTTCACCAGATGGTCAGACAGCTTCTGTAAAATATTCTGTAGATAATGTCCAGCAAAGTGGCAACCCTTACCGATCATCAGACAAAGACATTCTGTCTTTCAAAACTAGCTCTTCAATTCCGACTAGAGGTGCTATTGACTTTGCTTCAGCTGTGAGGAAGCTGGCTTCTCAGGACTCTGGTATTTGGAAGTATGATAAAAGTGGTTCTGGTGATGCTGCCATTGGTTCAAGTAGGACATCTCATTTTTTGGCTGGCTACGATGGTGGACTGGGTAGAGCCAGCTTCAGTGATCGGTTACAGACTCGTGGTTCAGCTCGGGCAGCACCTGTTTGGGTTGATACTGGTGACACAGTTGCAAATATGTACTCGGAGCTGAGGGAGGAGGCTCGTGACCATGCACGCTTACGTAATGCATATTTTGAGCAGGCACGGCAAGCCTATCTTATTGGCAATAAAGCCCTAGCAAAGGAACTTAGTGCTAAAGGGCAAGTGCACAACATGCATATGAAAGCAGCTCATGGAAAAGCTCAGGAATCTATTTATCGCCAGAGGAATCCAGTTGCTCCAGAGATGCAGGGGAATGGAAGAGGGCACGAGAGGATGATCGACCTACATGGACTGCATGTGAGTGAAGCGATTCATGTGCTAAAACATGAGCTTAGTGTGCTGAAAAACACGGCCAGAGCTGCCGATCAGCCTCTGCAGGTCTATATTTGTGTGGGGACAGGTCATCATACRAGAGGTTCCCGCACTCCTGCAAGACTTCCGATAGCTGTACAGCGTTTTCTACTCGAAGAAGGTCTTGACTTCACAGAACCTCAGCCAGGCCTACTTCGTGTTGTWATATATTGA 3528 0.4507 MNLSKKVSQTDAKLSSPSKATTLNPNAAEFIPFSLRTPFSGTTSSVDATARLANAGALGKAVLDRSESSISNNSEDEVHQYWRCQLPDDITPDFKVVGEESQGLNDLSLAGLSIHDDIEGLMFHSSKGSRYIFNEQEELSQQHINGNNFTDRLRFSNSXFREDPSSGSTLNTSANPWDRPIGSANKLVSSGQEGLTYDDNSGHGFLNDIFAENAIVDDTNLNPLEFLASLFPGFAAESLAEVYFANGCDLHMTIEMLTQEEPAPHKVEVIQVQPSFQFLFAVCLLQVDGSFIQNLNSKTLSAPNLSAMDFPALTSPDGHTASVRFSVDNVQQSGNPYRSSDKDILSFKTTSSIPSRGAIDFASAVRKLASQDSGIWKYDKSGSGDAAIGSSRTSHVLAGYDGGQGRASFSDRLQNRGLARGLAPVWLETGDTVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSAKGQVHNMHMKAAHGKAQESIYRQRNPVAPEMQGNGRGHERMIDLHGLHVSEAIHVLKYELXVLKNTARAADQRLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGLDFTEPQPGLLRVGLGETSRTCAVTLIMNLSKKVSQTDAKLSSPNKATTLNPNAAEFVPFSLRTSFSGTASSVDATARLANAGALGKAVLDRSESSISNNSDDEVHQYWRCQLPDDITPDFKVAGEDVSQDVNDLSLAGLSMHDDIEGLRFASSKGSRYILNEQEELSQQHINGNSFTDRLRFSNSSFREDPSSASFLNTSTNPWDRPIGNANQFVSSGQEGLTYDDNSRHGFXNDIFSENAIVNDTNLNPLEFLASLFPGFAAESLAEVYFANGCDLHMTIEMLTQLENLSSKTLSAPNLSAMDFPALTSPDGQTASVKYSVDNVQQSGNPYRSSDKDILSFKTSSSIPTRGAIDFASAVRKLASQDSGIWKYDKSGSGDAAIGSSRTSHFLAGYDGGLGRASFSDRLQTRGSARAAPVWVDTGDTVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSAKGQVHNMHMKAAHGKAQESIYRQRNPVAPEMQGNGRGHERMIDLHGLHVSEAIHVLKHELSVLKNTARAADQPLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGLDFTEPQPGLLRVVIY* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2768 1175 SUPERFAMILY SMR domain-like 515 596 IPR036063 -
Amo20g2768 1175 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 610 1175 - -
Amo20g2768 1175 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 596 - -
Amo20g2768 1175 CDD CUE_CID7_like 221 259 IPR041806 -
Amo20g2768 1175 SUPERFAMILY SMR domain-like 1092 1173 IPR036063 -
Amo20g2768 1175 ProSiteProfiles Smr domain profile. 517 598 IPR002625 -
Amo20g2768 1175 SMART DUF1771_2 1013 1078 IPR013899 -
Amo20g2768 1175 SMART DUF1771_2 436 501 IPR013899 -
Amo20g2768 1175 CDD CUE_CID7_like 831 873 IPR041806 -
Amo20g2768 1175 MobiDBLite consensus disorder prediction 1 21 - -
Amo20g2768 1175 SMART SMR_2 1091 1175 IPR002625 -
Amo20g2768 1175 SMART SMR_2 514 598 IPR002625 -
Amo20g2768 1175 ProSiteProfiles Smr domain profile. 1094 1175 IPR002625 -
Amo20g2768 1175 Pfam Domain of unknown function (DUF1771) 1014 1077 IPR013899 -
Amo20g2768 1175 Pfam Domain of unknown function (DUF1771) 437 500 IPR013899 -
Amo20g2768 1175 Gene3D - 1061 1174 IPR036063 -
Amo20g2768 1175 Gene3D - 484 597 IPR036063 -
Amo20g2768 1175 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2768 Amo-Chr20 126407354 126416760 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2768 - - vun:114164614 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2768 20 126407354 126416760 Amo20g2768 20 126407354 126416760 ECH
Amo10g2322 10 81189018 81198324 Amo20g2768 20 126407354 126416760 hybridization