Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2749 ATGCTACCGCTGATTTGCTATCCTGCTGCTGTTGTTCTCTATTCTTCTCAGTTCTCTATGTCGCTGCCTCCGTGCTATTTCCCTCAAATGCTGAAAGATCCGATAAACCCCTCAGCGAGGAAGCTCATCGGAGCTTCAATTCTTTTCCGTCGATGGATGACGACCAGCAAGAGGGTTCAAGACAGGAGTAAGCAGAAGAGGGTTAACGATCTTGAGGTCGCAACCGAGAAGTGGAAGATACTCTCCAAAATCCTCTTCTTAATCGAGCTTCTGAAGCAACAGTCCGAGATGATTATCCCTGTTAGATCCCTTGAAAACTATCGTAAGCAGATCAATCTCCCAAAGCCACACAGAATCTCTGATTTCATTCGAAAGACGCCAAAGCTCTTTGAACTCTACAAGGATCGCAAGGGGGTGCTGTGGTGCGGCTTGACGGAGAGAGCCGAGGAATTGTTGCAGGAAGAACGGAGAGTTCTTGAGCAGCATTCCGATAAGGCTGCGGAACACGTTACGAGGTTGCTGATGATGTCGGTGGATAAGCGTCTCCCATTAGAGAAGATTGCTCATTTCAGAAGGGATTTTGGGTTGCCTATGGATTTTAGGGCTAATTGGGTGCACCAATATCCGCAGCATTTTAGGGTTGTGAAGTCCTTTGATGGCATTAATCAAGTTGAGTGCTTGGAGCTTGTGAATTGGAATCCTAATTGGGCAATAACGGAATTACAGAAGAAGGTTACAGGTGTAACTGAATCCACTACTACCAATTTGCATATCCCTGGTATGRTGTCACTTCCATTCCCTTTGAAATTCCCTTCAAATTATAAAAGGGTGTATCGTTATAGTGAAAAGATTCAAGATTTTCAAAAGAGGGCTTATTTGTCTCCTTATGCTGATGCKAGAGGTCTCAAGGCTGGTTCTCTTGAATTTGATAAGAGGGCTGTTGCTGTTATGCATGAGATTCTTAGTTTCACCATTGAAAAGAGACTGGTCACTGACCACCTCACTCATTTCCGTTGGGAGATAGTGATGCCTCAGAAGCTCATGAGGATTCTTCTGAAGCACATTGGCATCTTCTATGTCTCSGAGCGGGGGAAGAGGTTTAGTGTGTTCTTGAATGAAGCATATGAAGGTGCGGAGCTGATTGAYAAATGCCCCTTGGTCCTATGGAGGGAAAAAGTCATGAGGCTTGTTGGTSATAGAGGGAGGAAGAAGAAGTTTGAGATACTCAGRGACATGTCGGATGTAGAAGTAGAAMGCGATATTGGCTTGATGCAGAGTGATTCGGAAGTAGAGGACTTGGACGTGCAGCTTGAGCAACATGGTTCCGTGGATTATGAGGATCCTTTACTTGTGGACAATTCTGAGATGGATGTTGAAGAGATSGCRTGTGAATATCGAAATTTTAAGAATTCTTGA 1416 0.4428 MLPLICYPAAVVLYSSQFSMSLPPCYFPQMLKDPINPSARKLIGASILFRRWMTTSKRVQDRSKQKRVNDLEVATEKWKILSKILFLIELLKQQSEMIIPVRSLENYRKQINLPKPHRISDFIRKTPKLFELYKDRKGVLWCGLTERAEELLQEERRVLEQHSDKAAEHVTRLLMMSVDKRLPLEKIAHFRRDFGLPMDFRANWVHQYPQHFRVVKSFDGINQVECLELVNWNPNWAITELQKKVTGVTESTTTNLHIPGMXSLPFPLKFPSNYKRVYRYSEKIQDFQKRAYLSPYADARGLKAGSLEFDKRAVAVMHEILSFTIEKRLVTDHLTHFRWEIVMPQKLMRILLKHIGIFYVSERGKRFSVFLNEAYEGAELIDKCPLVLWREKVMRLVGXRGRKKKFEILRDMSDVEVEXDIGLMQSDSEVEDLDVQLEQHGSVDYEDPLLVDNSEMDVEEXACEYRNFKNS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2749 471 Coils Coil 145 165 - -
Amo20g2749 471 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 51 462 IPR045040 GO:0003723
Amo20g2749 471 Pfam Plant organelle RNA recognition domain 66 400 IPR021099 GO:0003723
Amo20g2749 471 PANTHER EXPRESSED PROTEIN 51 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2749 Amo-Chr20 125990463 125993114 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2749 - - aprc:113865655 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2749 20 125990463 125993114 Amo20g2749 20 125990463 125993114 ECH