Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2748 ATGGCTAATAACGAACGAGATCTGTTCTCAACGGAGATAGTGAACCGTGGGATTGAGTCATCTGGACCGAACGCGGGTTCGTTAACGTTCTCGGTTAGGGTTCGTCGGCGGTTACCGGATTTTCTTCAATCGGTGAACCTCAAGTACGTGAAATTGGGGTACCATTACCTGATAAACCATGGCATTTACTTGGTGACGATACCGGTGCTGCTTGTGGTGTTCAGTGCTGAGGTTGGTAGTCTGAGCAAAGAGGATCTGTGGAAGAAGCTTTGGGAAGATGCGCGTTATGACCTTGCTACCGTCTTGGCTTCTTTTGCCGTCTTTGTTTTCACGCTCTCTGTTTACTTCATGTCCAGGCCTCGCCCCATTTACCTCGTTGATTTTGCATGCTACCAACCTCAAGATCACCTCAAGGTGTCAAAGGAGCAGTTCATTGAGCTAGCAAGAAAATCAGGCAAGTTTGATGAAGGGAGCTTGGAGTTTCAAAAGAGGATCCTAATGTCTTCAGGCATAGGCGACGAGACATACATCCCCAAAGCAGTGATAGCCTCCAACGAGAACACGGCCACCATGAAAGAAGGCKGAGCCGAGGCGTCGACGGTCATGTTCGGAGCACTCGACGAGCTCTTCGAGAAGACGAGGGTGCGGCCAAAGGACGTAGGAATCCTTGTGGTGAACTGCAGCATCTTCAACCCTACGCCATCGCTATCAGCAATGATCATAAACCATTACAAGATGAGGGGCAACATTCTGAGCTACAATCTTGGAGGAATGGGGTGCAGTGCTGGGATCATAGCGGTCGATTTGGCCAGGGATATTCTTCAGTCAAACCCTAATAACTACGCGGTTGTTGTCAGCACTGAGATGGTAGGCTTTAATTGGTACCAGGGAAAAGAGAGGTCCATGCTTCTTCCCAACTGCTTCTTTCGTATGGGTTGCTCCGCCACCTTGCTCTCCAATCGCCGCCGCGACTATAGCCGTGCCAAGTATCGTCTTGAGCATATTGTTCGCACGCACAAGGGTGCCGATGACCGCAGCTTCAGGTGTGTGTACCAAGAGGAAGATGAACAAAGATTCAAGGGGATCAAGATTAGCAAAGACTTGATTGAAATCGGTGGRGATGCTCTCAAAACAAACATCACCACACTTGGGCCTTTGGTGCTACCCTTCTCCGAGCAGCTCCTATTCTTTGGAACCTTGGTCTGGAGGCACTTGTTTGGCGGCAAATCTGACGGTGGAAACTCATCACCGTCAATGAAGAAGCCGTACATTCCGGACTACAAGCTCGCCTTCGAGCACTTCTGTGTGCATGCGGCGAGCAAGCCCATCCTCGATGAGCTCCAGAGGAATCTGGAGCTCAGCGACAAGAACATGGAGGCATCAAGGATGACGCTGCACCGCTTCGGCAACACTTCCAGCAGTAGCATTTGGTATGAACTTGCTTACTTGGAGGCCAAGGAAAGGGTTAGAAGAGGAGACCGCGTTTGGCAACTTGCTTTTGGTTCTGGATTTAAGTGCAATAGCGTTGTTTGGCGCTCCATGCGCCGAATCAACAAGCCTTCTAGGAACAACCCTTGGCTTGATTGCATCAACAACTACCCTCGCTCTCTCACTTAA 1617 0.5003 MANNERDLFSTEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLVTIPVLLVVFSAEVGSLSKEDLWKKLWEDARYDLATVLASFAVFVFTLSVYFMSRPRPIYLVDFACYQPQDHLKVSKEQFIELARKSGKFDEGSLEFQKRILMSSGIGDETYIPKAVIASNENTATMKEGXAEASTVMFGALDELFEKTRVRPKDVGILVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIAVDLARDILQSNPNNYAVVVSTEMVGFNWYQGKERSMLLPNCFFRMGCSATLLSNRRRDYSRAKYRLEHIVRTHKGADDRSFRCVYQEEDEQRFKGIKISKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFGTLVWRHLFGGKSDGGNSSPSMKKPYIPDYKLAFEHFCVHAASKPILDELQRNLELSDKNMEASRMTLHRFGNTSSSSIWYELAYLEAKERVRRGDRVWQLAFGSGFKCNSVVWRSMRRINKPSRNNPWLDCINNYPRSLT* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2748 538 CDD CHS_like 99 511 - -
Amo20g2748 538 PANTHER 3-KETOACYL-COA SYNTHASE 5 535 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo20g2748 538 Gene3D - 122 514 IPR016039 GO:0016746
Amo20g2748 538 Coils Coil 444 464 - -
Amo20g2748 538 SUPERFAMILY Thiolase-like 109 327 IPR016039 GO:0016746
Amo20g2748 538 Pfam FAE1/Type III polyketide synthase-like protein 115 404 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo20g2748 538 PIRSF Very_long_ch_3-ktacl-CoA_syn 40 538 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo20g2748 538 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 432 512 IPR013747 -
Amo20g2748 538 PANTHER 3-KETOACYL-COA SYNTHASE 10 5 535 - -
Amo20g2748 538 SUPERFAMILY Thiolase-like 333 513 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2748 Amo-Chr20 125983076 125987767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2748 3 537 Miscellaneous Gene Families AT2G26250 76.407 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2748 K15397 - gmx:100778487 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2748 20 125983076 125987767 Amo20g2748 20 125983076 125987767 ECH
Amo10g2310 10 80859829 80864765 Amo20g2748 20 125983076 125987767 hybridization