Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2741 ATGCTTGTCTCTTCTGCAGGCGGAGGAGGAGGAGGAGGAGGAGGAATCTCATGGGATCTCAAATGGCTTCTGCAGTGGGTTTTCTTAGCGGTTGTCGTCGCCGTTGGATTGCACGCTCTCGTCAAGAACACCGCTTCAAGATACTTTGAGGTTCACGCCAATTTCGATTCTGATCGGACTCATCCCATGCCTTCTTCTCCCTCCGCCGCCGCCGCCATTGCAATGGACCAACCTCTTTGCGCCGTCTGCTCCAAACACGCCTCCAGCAGGTGTTCCCGCTGCAAATCCGTCAGATACTGCTCCCAAGCGTGTCAACAGATGCACTGGAAATCCGATCATAAGTTGAAATGCAAGGAAGTTCATAGTACCATGAATTTGGCTCAATCTGGGCCAGCTAGTCCAGGGTTTAAAGCTTCTGCTGCTGTTAATAAAAGCACATCTTCAATTGCCCTAATACCTGCTTGTGGACGTGAAATTTCCAAGCCGATCAAGCAGCCTAAAAATCCTCTTTTTCCTTATGATGAATTTGTTAAATTCTTTAACTGGGATAAGCCTGGATTTCCTCCTTGTGGGCTCTTGAATTGTGGAAATAGCTGCTTTGCAAATGTGGTTCTCCAATGTCTCTCATTCACAAGGCCGCTTATCGCCTACCTGTTGAAAAACGGCCACCGCAGAGAATGCAGTCGTAATGATTGGTGCTTTCTGTGTGAATTTGAAATCCATGTTGAGAAAGCAAGGCAAAGTTCACAGGCATTTTCTCCAATGAACATTCTCTCTCGTTTGCCTAATATTGGTGGCACACTGGGTTATGGAAGACAAGAGGATGCTCATGAATTCATGAGGTTTGCAATCGACACTATGCAGTCTGTATGCCTTGATGAATATGGTGGAGAAAAAGCTGTCCCTCCTAACCTTCAAGAGACAACACTTATTCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGTTTTGCACAAAATGTGAGAAGCAGTCAAATCAATACGAAAACATGATGGACTTGACTGTTGAAATTAATGGAGATGCTTCTTCCTTGGAGGAATGTCTAGATCAGTTCACTGCCAAGGAGTGGCTTCATGGTGAAAATATGTATAAATGTGATGGGTGCAAAGATTATGTCAAGGCTTGGAAACGTCTCACTGTGAAACGAGCTCCAAATATTCTTACTATTGCCTTAAAAAGATTTCAGAGTGGGAGGTTTGGCAAACTTAACAAGAGAGTAACGTTCCCTGAGACTCTAAATCTTAGCCCTTTCATGAGTGAAGTTGAAGATGGATCTGATATTTATAAGCTGTATGCTGTTGTAGTCCACATCGACATGCTGAATGCTTCCTTTTTTGGTCATTACATTTGCTACATTAAGGATTTCCATGGAGACTGGTATAGAATTGATGATTGGAAGGTAATGCAAGTGGAATTGGTGGAGGTACTTTCTCAAGGTGCATACATGTTGTTATACAGCAGGGTAACTGCTCGGCCATCAGGCCTTCAAACTACAGAATCTTCGGACACACACATGCAGACAGTTGAAGTGGAAGTGGAGCCCAGCCCAACTGAACAGGCCGAATGTCTCTCAAATATGGAGACTGTAACTTGCAATGGCACATGTGATGCTTTTCCAGCTGAACATAGTAGTAATTCAGAACTGAAGGTTTCTGCCTGTGAACAGTCTAAGGACATCCGCTTGATTGATGTTGCAAATGGGACTCCAAGTTGGGCAACCGAATCGTCTCATGTACCTTCTAAATCTGGCAAAGATTTGGAGGATATAGATATGAGGAGATCAAATCTCTGCTCATCTGTTGTGGAAGATATTTTATGCTGCACGGAAGAGCAAGACGATACTGATATGGCTAAGGTCAGTGTTTCTCCACGCTTGGCAAATGGATTTTCTTCCCTGAATGATTCTTCTGTTTCAATGGATTATCAAAACTCGGGGGAAGATCAAGAGCATGTAGAACTTGTCAAATGCAAGCCACTGACAGCACAAGGCCATGCAAATCATGGCAACGGGTATGCTAGTGCAAACAAATATGCTATTCCAGTTGAAGATGATGGCTCTGTGTTTTCTGGCGTTGGTTCTTTCTCCACTGAAACATCCGCATCAGAAATGCATCAATTGAAGCGGAGATTGCCATTTCACGGTTCTGAAACTGGCCACGCAAATGGAGTCAAGAAAGTGGAGGTATCTGGGGACAAGTTAACAACGTAG 2232 0.4418 MLVSSAGGGGGGGGGISWDLKWLLQWVFLAVVVAVGLHALVKNTASRYFEVHANFDSDRTHPMPSSPSAAAAIAMDQPLCAVCSKHASSRCSRCKSVRYCSQACQQMHWKSDHKLKCKEVHSTMNLAQSGPASPGFKASAAVNKSTSSIALIPACGREISKPIKQPKNPLFPYDEFVKFFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLKNGHRRECSRNDWCFLCEFEIHVEKARQSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFAIDTMQSVCLDEYGGEKAVPPNLQETTLIQHIFGGHLQSEVFCTKCEKQSNQYENMMDLTVEINGDASSLEECLDQFTAKEWLHGENMYKCDGCKDYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLNLSPFMSEVEDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFHGDWYRIDDWKVMQVELVEVLSQGAYMLLYSRVTARPSGLQTTESSDTHMQTVEVEVEPSPTEQAECLSNMETVTCNGTCDAFPAEHSSNSELKVSACEQSKDIRLIDVANGTPSWATESSHVPSKSGKDLEDIDMRRSNLCSSVVEDILCCTEEQDDTDMAKVSVSPRLANGFSSLNDSSVSMDYQNSGEDQEHVELVKCKPLTAQGHANHGNGYASANKYAIPVEDDGSVFSGVGSFSTETSASEMHQLKRRLPFHGSETGHANGVKKVEVSGDKLTT* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2741 743 ProSitePatterns Zinc finger MYND-type signature. 80 117 IPR002893 -
Amo20g2741 743 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 191 206 IPR018200 GO:0004843|GO:0006511
Amo20g2741 743 ProSiteProfiles Zinc finger MYND-type profile. 80 117 IPR002893 -
Amo20g2741 743 SUPERFAMILY Cysteine proteinases 186 517 IPR038765 -
Amo20g2741 743 SUPERFAMILY HIT/MYND zinc finger-like 76 122 - -
Amo20g2741 743 Gene3D Cysteine proteinases 186 506 - -
Amo20g2741 743 Pfam MYND finger 80 117 IPR002893 -
Amo20g2741 743 Pfam Ubiquitin carboxyl-terminal hydrolase 190 493 IPR001394 GO:0004843|GO:0016579
Amo20g2741 743 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 29 660 - -
Amo20g2741 743 MobiDBLite consensus disorder prediction 720 743 - -
Amo20g2741 743 CDD Peptidase_C19E 189 494 - -
Amo20g2741 743 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 190 496 IPR028889 -
Amo20g2741 743 Gene3D - 67 123 - -
Amo20g2741 743 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 29 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2741 Amo-Chr20 125655568 125660425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2741 15 519 Miscellaneous Gene Families AT4G31670 61.057 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2741 K11855 - gmx:100810577 988.408