Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2701 ATGGGTCACATTGGTTCCAGCAAAGACGTCAAGCTCTACGACAAGGGTAAGCACGATGCAATGGACATTGACTCCGACGAAAACTTCGACGACGACGATTTCCCCTCAAACGGCGTACTCAGGGGCTTAGGCCGRGAGCCACTCAAGAACTTCTGCAAGAAAGCYGCYGAGCTCTTCTTCGCGGAGTACGGCCTCATTAGCCACCAGATCAATTCCTTCAACCAGTTTATCGCCACMGGTGTTCAGAGCGCCTTCGATTCCTTTGGTGATCTCATTGTGGAGCCTGGTTATGATCCTTCGAAGAAACGCGACGAAAATGATTTTTACCGTCACGCCGCCGTTAAGTTTGGGAAGGTGACGCTCGASCGACCCAAGTTCTATGCTGGCGAAGGGCATGGAGATTTCAAGATGCTTCCAAGACATGCACGCCTTCAGAGGATGACATACTCTTCACAGATTAAAGTCGAGATTCAAGTTCAGGTGTATGTGCCACAGATGGTGAGGAGTGACAAATTTAAGACCGGGCAAGAACAGTACCTTGAACAAAAGACTCTGAAGGAAGAGAGCAGAGAAATCATCATTGGAAGACTGCCTATTATGGTCAAGTCTGATCTGTGCTGGATGAAAGGGGTTGAGAAAGGCGATTGTGAGTTTGATCATGGAGGGTACTTCCTGGTCAAGGGTGCTGAGAAGACTTTTATTGCACAGGAGCATATCTATTTGAGAAGGCTCTGGATCATAGATAATCCATGGTGGTCAATCGGGTACAAGTCTCAAGTGAAGAGGCATAGATTGATCGTTAAGCTGGTGGGAAGTTCAAGTGTTGAAGGAATTGATAGTGGAGAGAAGGTCCTAACTGTATACTTCCTGGGCATTGAAATCCCCATTTGGGTGCTGTTTTTTGCTCTTGGAGTCTCATCTGACAGGGAGGTGGTAAAGCTCATTGATTTTGGTTATGATGATGCCAGAGTCGAAAATATCCTTWTGGCCTCTATCCGCGATGCTGATGAGAGTAAGAATTATTCCGATTTCCGTGAACGGAAGAATGCAGTGAATTACATAGAGAAGGGTATTAAAGGTGTCCAGTTTCCACCTCCTGAACCTGTTGAAGACTGCTTGAGAATGTATATTTTTCCCAACATGGGAGGCTTGAAGAAAAAGGCACGATTCCTTGCATATATGGTGAAAGGTCTCTTAATGGCTTATACTGGCCGCAGAAGGTGTGATAACCGGGATGATTTTCGAAAYAAGAGGCTTGAGTTGGCTGGGGAGCTTTTAGAGCGYGAGCTGAAAGTGCACATTGCACATGCTCGGAAGCGAATGTCAAAGGCATTGCAGAGAGACCTCTATGCAGACCGTGAAGTCCGCCCAATTGAAGGCTATCTTGATGCTTCGATAATTACAAATGGTCTCCAAAGAGCATTCTCCACTGGAGCGTGGTCTCATCCTTACAAGAGATTGGAAAGGATTTCTGGGGTGGTTGCAACTGTTGGGCGAACCAACCCTTTACAAACTATGGCTGAGTTGAGAAGGACAAGGCAGCAGGTTCAGTACACTGGAAAAGTTGGTGATGCTAGATACCCGCATCCTTCTCACTGGGGGAAGGTCTGCCTCCTCTCTACCCCAGATGGTGAAAACTGTGGCCTGGTGAAAAATTTGGCTGTTACTGGACTGGTAAGCACCAACATAACTGAAATCATATTGTCTGAGTTGCTTGACTCTGGTATGGAAGAGTTACTTGATGACACTTCTACTGACTTGGGCRACAAGGATAAGATCTTCCTMAATGGGGATTGGGTTGGTGTGTGCACAAATTCCAGTGCATTTGTTACAGATCTCAGAAGTAAAAGGCGTAGAAATCAATTACCTCATCAGATGGAGATCAAATTGGACAAATCTCTAAAAGAAGTGCGCATAAACACTGATGCAGGAAGGATTCTACGTCCACTTTTGGTAGTTGAAAACCTTCACAAGATAAAAGAATCAAAAGGAACTAAATGGGAGCATTCTTCTTTCAAATCCCTTTTGGAGAATGGAGTGATCGAACTTATTGGGCCCGAAGAAGAGGAAGACTGCCGKACTGCATGGGGTATCAGATATTTGTTTGGGARAGATGGYGACAAATACACCCACTGTGAACTTGACATGTCATTTTTACTGGGTTTAAGCTGTTCACTGATACCGTTTGCCAATCATGACCATGCAAGGAGGGTACTCTACCAGGCCCAGAAGCACTCCTCGCAGGCCATTGGSTTTGCTACCACAAACCCCAACATCAGAGTGGACACCTTRTCACACCAGTTGTACTATCCCCAGAAGCCCCTCTTCCGTACCATGACTTCTGATTGTCTTGGTAAGAAATGGTWTYCACTGGGTAATAGTAAACTTCCAAAGGCTGAATTCTATAATGGGCAAGTTGCAATTGTGGCTGTTAATGTGCATATGGGATACAATCAAGAGGATTCATTGGTGATGAACCGTGCTTCTTTGCAGCGTGGTATGTTCAGATCTGAGCATATAAGGAGTTACAAGTCCGAAATTGATAATACTGAATCTAAGGAGAAGCGGAAGGATAATGTGAATTTTGGGAAGATACAAAGTAAAATTGGCCGTGTTGATAGCCTTGACGAAGATGGATTTCCATACGTCAGTGCAAATTTGCAAAGTGGTGATATTATTATTGGTCGTTGTGCCGAATCTGGAGCAGACCATAGCATAAAGTTAAAACACACCGAAAGAGGGTATGTTCAGAAGGTTGTGCTGTCCTCAAATGACGAAGGGAAGAATTTCGCTGTGGTTTCATTGAGACAGGTACGAACTCCCGTTCTTGGAGACAAGTTTTCAAGCATGCATGGTCAAAAGGGTGTCTTGGGATTTCTGGAGTCTCAGGAAAATTTCGCTTTCACAAGACATGGTGTGGTTCCCGATATTGTCATTAATCCACACGCATTCCCCTCACGACAAACACCAGGACAACTCCTTGAGGCTGCTTTGGGGAAGGGCATTGCTCTTGGTGGTTCTTTGAGGCATGCTACCCCGTTCTCCACACCCTCTGTTGATGACATCATGGATGAGCTCCACAGAAATGGGTTTTCAAGATGTGGATATGAGAGAGTACTAAATGGGAGAACTGGTGAGATGGTCCGTTCACTAATATTTATGGGACCAACATTCTACCAGCGTCTACACCACATGTCTGAGGACAAAGTAAAATTCAGGAATACAGGTCCCGTTCATCCACTGACACGACAACCTGTAGCRGATAGGAARCGGTTCGGAGGTATCAAATTTGGTGAAATGGAGCGAGACTGCCTCATAGCTCACGGCGCATCAGCCAACCTGTATGAACGYCTCTTTACGCTCAGTGACTCCTCTCAGATACACATCTGTAGTAAATGCAAAAATGTAGCTAATGTGATATTGCGGCCAGTATCTGGTGGCCGCAAGATAAGGGGTCCATACTGCCGCATATGTGAATCTGCGGATGACATTGTGATGGTCAATGTCCCATATGGAGCCAAATTGTTGTGCCAAGAGCTTTTTAGCATGGGCATAAATCTCAAATTTGAAACCCATTTCTGCTAG 3585 0.451 MGHIGSSKDVKLYDKGKHDAMDIDSDENFDDDDFPSNGVLRGLGREPLKNFCKKAAELFFAEYGLISHQINSFNQFIATGVQSAFDSFGDLIVEPGYDPSKKRDENDFYRHAAVKFGKVTLXRPKFYAGEGHGDFKMLPRHARLQRMTYSSQIKVEIQVQVYVPQMVRSDKFKTGQEQYLEQKTLKEESREIIIGRLPIMVKSDLCWMKGVEKGDCEFDHGGYFLVKGAEKTFIAQEHIYLRRLWIIDNPWWSIGYKSQVKRHRLIVKLVGSSSVEGIDSGEKVLTVYFLGIEIPIWVLFFALGVSSDREVVKLIDFGYDDARVENILXASIRDADESKNYSDFRERKNAVNYIEKGIKGVQFPPPEPVEDCLRMYIFPNMGGLKKKARFLAYMVKGLLMAYTGRRRCDNRDDFRNKRLELAGELLERELKVHIAHARKRMSKALQRDLYADREVRPIEGYLDASIITNGLQRAFSTGAWSHPYKRLERISGVVATVGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCLLSTPDGENCGLVKNLAVTGLVSTNITEIILSELLDSGMEELLDDTSTDLGXKDKIFLNGDWVGVCTNSSAFVTDLRSKRRRNQLPHQMEIKLDKSLKEVRINTDAGRILRPLLVVENLHKIKESKGTKWEHSSFKSLLENGVIELIGPEEEEDCRTAWGIRYLFGXDGDKYTHCELDMSFLLGLSCSLIPFANHDHARRVLYQAQKHSSQAIGFATTNPNIRVDTLSHQLYYPQKPLFRTMTSDCLGKKWXXLGNSKLPKAEFYNGQVAIVAVNVHMGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNTESKEKRKDNVNFGKIQSKIGRVDSLDEDGFPYVSANLQSGDIIIGRCAESGADHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRTPVLGDKFSSMHGQKGVLGFLESQENFAFTRHGVVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGSLRHATPFSTPSVDDIMDELHRNGFSRCGYERVLNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRICESADDIVMVNVPYGAKLLCQELFSMGINLKFETHFC* 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2701 1194 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 36 1191 IPR015712 GO:0003899|GO:0006351|GO:0032549
Amo20g2701 1194 Pfam RNA polymerase Rpb2, domain 2 278 420 IPR007642 GO:0003677|GO:0003899|GO:0006351
Amo20g2701 1194 CDD RNA_pol_B_RPB2 65 1190 IPR015712 GO:0003899|GO:0006351|GO:0032549
Amo20g2701 1194 Gene3D RNA polymerase alpha subunit dimerisation domain 1078 1192 - -
Amo20g2701 1194 Gene3D - 755 940 IPR014724 GO:0003899
Amo20g2701 1194 Pfam RNA polymerase beta subunit 64 457 IPR007644 GO:0003677|GO:0003899|GO:0006351
Amo20g2701 1194 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 36 1191 - -
Amo20g2701 1194 Pfam RNA polymerase Rpb2, domain 7 1093 1191 IPR007641 GO:0003677|GO:0003899|GO:0006351
Amo20g2701 1194 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 49 1191 - -
Amo20g2701 1194 Gene3D - 725 1077 IPR037033 GO:0003677|GO:0003899|GO:0006351
Amo20g2701 1194 Gene3D - 409 593 - -
Amo20g2701 1194 Gene3D - 58 239 - -
Amo20g2701 1194 ProSitePatterns RNA polymerases beta chain signature. 944 956 IPR007121 GO:0003677|GO:0003899|GO:0006351
Amo20g2701 1194 Pfam RNA polymerase Rpb2, domain 3 498 556 IPR007645 GO:0003677|GO:0003899|GO:0006351
Amo20g2701 1194 Pfam RNA polymerase Rpb2, domain 4 593 654 IPR007646 GO:0003677|GO:0003899|GO:0006351
Amo20g2701 1194 Pfam RNA polymerase Rpb2, domain 6 724 1091 IPR007120 GO:0003677|GO:0003899|GO:0006351
Amo20g2701 1194 Gene3D RNA polymerase Rpb2, domain 2 252 408 IPR037034 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2701 Amo-Chr20 124758191 124764025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2701 - K16252 gmx:100815934 1863.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2701 20 124758191 124764025 Amo20g2701 20 124758191 124764025 ECH
Amo10g2258 10 79357325 79363399 Amo20g2701 20 124758191 124764025 hybridization