Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2665 ATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTATGGAACGATAACCTAGAGGAGGAGTTCGCTTTGATCCGTGAAATCGTTGACGAATACAACTATGTCGCCATGGATACTGAATTCCCCGGTGTTGTTCTTCGTCCCGTTGGGAACTTCAAGAATATCAATGACTACAACTACCAGACCTTGAAGGACAACGTTGACATGTTGAAGCTGATCCAATTAGGTCTCACTTTCTCTGACGAGCACGGCAACCTCCCCACCTGTGGCACTGAGAGCTCCTGCATCTGGCAATTCAACTTCCGTGAGTTCAACATCAGCGAGGACATCTTCGCCAGCGATTCGATCGAGCTTCTGCGCCAATGTGGCATTGATTTCAAGAAGAACAACGAAAAAGGTATTGATGTGAACCGGTTCGGGGAGCTTCTCATGTCATCGGGGATCGTGTTGAACGATGGTGTGAGTTGGGTAACCTTCCATAGCGGTTACGACTTCGGTTACCTCCTCAAGCTGTTGACGTGCCGAAGCTTGCCGGATACGCAGGCAGGGTTCTTTGAACTGATCAAGATGTATTTCCCGATGTTGTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTCCATGGTGGGTTGAACAAGCTCGCGGAGTTGTTGGATGTTGAGAGAGTTGGTGTGTGCCATCAAGCTGGATCGGATAGCTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACATTTTTCAGTGGCTCCACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGTGTTGAGAATGGACAAACTAATTGA 822 0.4684 MSILPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGTESSCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDGVSWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFELIKMYFPMLYDIKHLMKFCNSLHGGLNKLAELLDVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVENGQTN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2665 273 Gene3D - 2 269 IPR036397 GO:0003676
Amo20g2665 273 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 272 IPR039637 GO:0004535|GO:0030014
Amo20g2665 273 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Amo20g2665 273 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED 1 272 - -
Amo20g2665 273 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2665 Amo-Chr20 123389013 123391379 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2665 K12581 - gmx:100785970 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2665 20 123389013 123391379 Amo20g2665 20 123389013 123391379 ECH
Amo10g2200 10 77137832 77139948 Amo20g2665 20 123389013 123391379 hybridization