Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2540 ATGAATCTTCGAATTKMAAACACAAACACCATCGATTTRCTTCAGCTTTCTAAACCTTTCTTCCCTCWTAAAACCCTTTTCYCCCATTCCTTACCTCAACGCCTTCTTCTCAGAACTAGATTACGCCGTAAACACTCTTCCATCACTCTCCGCAACCTCACTGTAACTGCTTCTAATGCTCCCAATCCTCTTTCAAACTCAGCAACTCTCACCCAACAAGAGCAACAAGAAGAAGAAGAAGAAGAAGATGCTGAGTCTGCTCAGCTATTCGAGAGACTGAAAGAGGCCGAAAGGAAACGGGTGAATGAAATGGAAGAGTTTGAGAAGAAGGCAAATATGCAGTTAGAGAGGCAGCTTGTGATGGCTTCTTCATGGAGCCGAGCTTTGYTGACCTTGCGYGGAAAGCTGAAGGGAACTGAGTGGGATCCTGAAAACTCMCACAGGATAGACTTCAGCGAGTTTATGAGACTTCTTGACTCTAATAATGTCCAGTTTATGGAGTACTCCAATTATGGCCAAACAATATCAGTGATTCTACCATACTACAAAAATGGGAAAACACCAGGGACTGAAGGTAATCCTAAGGATATTGTTTTCCGCCGGCATGTGGTGGATCGAATGCCAATTGATTGTTGGAATGATGTTTGGAGAAAACTGCATCAGCAAATTGTAAATGTTGATGTCATTAATGTGGATACAGTACCTTTTGAAGTTTACACAACTGTCGCAACTGCAGTCATATGGTCTATGCGTCTTGCTGTGGCTGTTGGGTTTTACGTGTGGATTGATAATTTGATGAGACCAATATATTCAAAGTTGATSCCTTGTGATTTAGGATCTCCTACCCAGCAAACTAAGCAGCCACTCAAACGCCAAGCACTTGGATCGCTGGGCAAAAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTCACTTTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAATTGCAAGAGATTGTACGAATTTTAAAGAATGATGAGGAGTTTCAAGACAAAGGAATTTATTGYCCAAAAGGTGTGCTTCTCCAYGGACCTCCAGGAACGGGTAAAACTCTACTGGCTAAAGCCATCGCTGGGGAAGCAGGGTTGCCTTTTTTTGCGGCAAATGGCACAGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCACGTGTTAAGGATCTTTTTGCTAGTGCAAGATCATTTTCACCTTCTATCATATTTATTGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGACCTGACATTGGTGGAGGAGGTGCTGAACGGGAACAAGGCTTACTTCAGATACTTACTGAGTTGGATGGATTCAAAGTTTCTACAGCACAGGTGCTTGTGATCGGTGCTACAAATAGATTAGACATTCTTGATCCCGCTTTGTTGAGGAAGGGTCGTTTTGACAAGATCATTCGAGTTGGTTTGCCATCAAAGGATGGAAGATTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTCTTTCGCTCAGAGGAGGAAAAGGAGATTCTTCTTAGGGAAATTGCAGAGCTTACAGAAGATTTTACTGGAGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGATTACATTGGGCGAGATGAGCTACTTGAGGCATTAAAGAGGCAAAAAGGAACTTTTGAAACAGGGCAAGAGGATAGTGCTGAAATTCCTGAAGAATTGAAGCTTAGACTGGCATACAGAGAAGCGGCAGTTGCTATTCTTGCATGTTATTATCCTGAACCACACCGCCCTTTTGATGAGACTAATATAAACTCAATCCAGAGCCGGCCAAATATGAGTTATTCTGAGACTGCTGGCCAAGTTTTTGCGAGGAAGTCAGATTATGTAAATTCTATTATCCGTGCATGTGCTCCAAGAATAATTGAGGAGGAGATGTTTGGAATTGACAACTTATGTTGGATCTCTGCAAAGTCAACGTTAGAAGCTTCAAGGCGTGCTGAGTTTTTAATTTTACAGACAGGAATGACAGCATTTGGGAAAGCATACTTCAAAAACGAAAGTGATCTTGTACCTAATCTTGCAATGAAGCTTGAAGCGCTCCGAGATGAGTATATGCGTTATGCTACAGAAAGGTGTTCATCCGTGCTCAGAGAATACCAGGAAGCAGTTGAGACAATCACAGATGTTTTGCTTGAAAAGGGGCAAATCAAAGCTGAGGAGATATGGGACATTTATAAGAGTGCTCCTCGTCGAACTCAGCCTCCTGTGAGTCCAGTTGATGAATATGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGCCTTCCGGGAAGAGTTACATTCGCACCTGGCAATGCCGGGTTTGCGACCTTTGGAGCTCCTCGCCCAACCGAGACACAAATTGTGAGCGACGAAACTTGGAAGCTAGTAGATGGTATATGGGACAAAAAGATTCAAGATATTAGAGATGAATCTACAAGGGTGATCGAAGAAGAGAAAGAAAGGCCACAACTTTTGATGGCAAGCCATTTCCTTTGA 2568 0.4248 MNLRIXNTNTIDLLQLSKPFFPXKTLFXHSLPQRLLLRTRLRRKHSSITLRNLTVTASNAPNPLSNSATLTQQEQQEEEEEEDAESAQLFERLKEAERKRVNEMEEFEKKANMQLERQLVMASSWSRALLTLRGKLKGTEWDPENSHRIDFSEFMRLLDSNNVQFMEYSNYGQTISVILPYYKNGKTPGTEGNPKDIVFRRHVVDRMPIDCWNDVWRKLHQQIVNVDVINVDTVPFEVYTTVATAVIWSMRLAVAVGFYVWIDNLMRPIYSKLXPCDLGSPTQQTKQPLKRQALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTELDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRFAILKVHARNKFFRSEEEKEILLREIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSAEIPEELKLRLAYREAAVAILACYYPEPHRPFDETNINSIQSRPNMSYSETAGQVFARKSDYVNSIIRACAPRIIEEEMFGIDNLCWISAKSTLEASRRAEFLILQTGMTAFGKAYFKNESDLVPNLAMKLEALRDEYMRYATERCSSVLREYQEAVETITDVLLEKGQIKAEEIWDIYKSAPRRTQPPVSPVDEYGALIYAGRWGIHGISLPGRVTFAPGNAGFATFGAPRPTETQIVSDETWKLVDGIWDKKIQDIRDESTRVIEEEKERPQLLMASHFL* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2540 855 Coils Coil 67 113 - -
Amo20g2540 855 CDD AAA 319 487 - -
Amo20g2540 855 Pfam AAA+ lid domain 516 556 IPR041569 -
Amo20g2540 855 Gene3D - 296 486 IPR027417 -
Amo20g2540 855 Gene3D Peptidase M41 570 759 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo20g2540 855 PANTHER METALLOPROTEASE M41 FTSH 57 824 - -
Amo20g2540 855 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 57 824 - -
Amo20g2540 855 Coils Coil 505 532 - -
Amo20g2540 855 Gene3D - 488 568 - -
Amo20g2540 855 MobiDBLite consensus disorder prediction 57 92 - -
Amo20g2540 855 SUPERFAMILY FtsH protease domain-like 577 759 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo20g2540 855 MobiDBLite consensus disorder prediction 57 73 - -
Amo20g2540 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 561 IPR027417 -
Amo20g2540 855 ProSitePatterns AAA-protein family signature. 457 475 IPR003960 GO:0005524|GO:0016887
Amo20g2540 855 Pfam ATPase family associated with various cellular activities (AAA) 352 486 IPR003959 GO:0005524|GO:0016887
Amo20g2540 855 SMART AAA_5 348 489 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2540 Amo-Chr20 119228018 119233755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2540 313 596 Miscellaneous Gene Families AT3G47060 46.831 1.49e-67 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2540 - - ahf:112783256 1642.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2540 20 119228018 119233755 Amo20g2540 20 119228018 119233755 ECH