Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2403 ATGAACATCAACATGGCTCTCACCAATCTCCCATTCTGTTCTCCACCACATCTCCACCGCTGCACCTCACTCACTCTCACTCGCTCCACCACAAAACCCACTCTTTCCGTAACCAATTGCCTCTCCCTCCAAGAACCCTTTACTGCTTCAATATCTAAACTCAGCGTCGGTCAAGATTTGCCGCCAAATTACGGCGATTGGCTTCCCAAACCTGACCTCGATAATCGCAGAAGAGCCGGAATTCTTCTACATCCGACCTCGTTTCGGGGACCGTACGGCATCGGCGATCTCGGCCAAGAGGCATTTCGTTTCATTGATTGGCTCCATCAATCTGGTTGCTCCCTTTGGCAGGTGCTACCACTTGTGCCTCCTGGCAGAAAGGCTAACGAAGAAGGTTCCCCTTACTCCGGCCAGGATCTTGTTAAGGATGGATTATTGGAAAAGCATGAGCTTCCAGAACCCATTCATGCTGAGCGGGTGAATTTTTCACTTGTTGCTGACCTTAAGGATCCCTTGTTAACTAAAGCTGCAGAGAGGCTGATTTCAAGTGAAGGGGAACTCAAAACACAGCTTGAGAGTTTTCACAGGGACCCTAACATATCAAGCTGGCTTGAAGATGCAGCTTATTTTGCTGCTATTGATGATAGTTTAAATACAATCAGCTGGTACAATTGGCCTGAACCTCTAAGAAACCGCCATCTTGCAGCTCTAGAAGAGATTTATCAACAAAAAAGACACTTCATAAATGTGTTTATTGCTCAACAGTTCTTGTTCCAAAGGCAATGGCAGAAAGTTCGTAACTATGCAGAGAGTAGGGGAATTAGGATAATGGGAGACATGCCCATATATGTTGGTTACCATAGTGCAGATGTTTGGGCAAATAAGAACCAGTTTATACTGAACAGGAAAGGTTTTCCTCTTTTAGTTAGTGGAGTTCCACCCGATGCATTCAGTGAAACTGGTCAGCTGTGGGGCAGAAGTCCTTTGTATGATTGGAATGCCATGGAGAAAGAAGGATACTCGTGGTGGATACGCCGCATACGCCGTGCACAGAATTTATATGATGAATTTAGGATCGATCACTTTAGAGGACTTGCTGGATTTTGGGCTGTTTCCTCTGCAGCAAAGGTAGCTATGGTTGGAAAGTGGAAGGTAGGACCTGGGATATCCTTCTTTGATGCCATTTTCAGAGCAGTTGGAAGAATTAATATCACAGCAGAAGACTTGGGAGTTATCACAGAGGATGTAGTTCAACTAAGAAAATCCATTGGAGCACCTGGAATGGCAGTCCTCCAGTTTGGGTTTGGAAGTGATGCTGCCAACCCACATTTGCCTCATAATCATGAGTGCAATCAAGTTGTATATACAGGGACTCACGATAATGACACAATCCAAGGTTGGTGGGAAGCTTTGAAGCAAGGAGAAAAATCAAATGTGATAAATTATCTCTCACTAAGTGAGCCAGATGACATTTCTTGGGCACTAATCAAGACAGCACTGGCTTCTGTTGCTCAAACAACAATAATACCTATGCAAGATGTTCTTGGACTGGGGAGTTCTGCCAGGATGAACATTCCTGCCACTCTGATTTCGCAAATTTCATTCCATCAAGTTTCTGCACGAGCATTGAATCTTGTATTTTAA 1644 0.4459 MNINMALTNLPFCSPPHLHRCTSLTLTRSTTKPTLSVTNCLSLQEPFTASISKLSVGQDLPPNYGDWLPKPDLDNRRRAGILLHPTSFRGPYGIGDLGQEAFRFIDWLHQSGCSLWQVLPLVPPGRKANEEGSPYSGQDLVKDGLLEKHELPEPIHAERVNFSLVADLKDPLLTKAAERLISSEGELKTQLESFHRDPNISSWLEDAAYFAAIDDSLNTISWYNWPEPLRNRHLAALEEIYQQKRHFINVFIAQQFLFQRQWQKVRNYAESRGIRIMGDMPIYVGYHSADVWANKNQFILNRKGFPLLVSGVPPDAFSETGQLWGRSPLYDWNAMEKEGYSWWIRRIRRAQNLYDEFRIDHFRGLAGFWAVSSAAKVAMVGKWKVGPGISFFDAIFRAVGRINITAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDAANPHLPHNHECNQVVYTGTHDNDTIQGWWEALKQGEKSNVINYLSLSEPDDISWALIKTALASVAQTTIIPMQDVLGLGSSARMNIPATLISQISFHQVSARALNLVF* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2403 547 Pfam 4-alpha-glucanotransferase 83 529 IPR003385 GO:0004134|GO:0005975
Amo20g2403 547 TIGRFAM malQ: 4-alpha-glucanotransferase 152 528 IPR003385 GO:0004134|GO:0005975
Amo20g2403 547 SUPERFAMILY (Trans)glycosidases 58 531 IPR017853 -
Amo20g2403 547 Gene3D Glycosidases 73 537 - -
Amo20g2403 547 PANTHER 4-ALPHA-GLUCANOTRANSFERASE DPE1, CHLOROPLASTIC/AMYLOPLASTIC 43 528 IPR003385 GO:0004134|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2403 Amo-Chr20 112222393 112229133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2403 25 530 Glycoside Hydrolase AT5G64860 67.630 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2403 K00705 - gmx:100795007 867.84