Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2360 ATGTTGACGGCCGCAACTCTCACTCCTCTATCCTCATCTAATTTTCGCATTTCACGTAACTCAATTCCTCAAAATCCGTGTCGTAGCTCCAAAGTCAACACCTTTCTGCCGAATTTCAGGGGTGGCTGCAAATGTGAGACTCAAACTGAAAGGGGGTTAGAGTTTGAAATTGGCGGTGCATTCTACCGGCAAGAGAGCGCCTCCGGGAGGGATCTCGGAGTACTCGCCGCTTTCTTGCATAAGAAGTCCAATGGGAGCTTGCGCGTGCTTGATGCGCTTTGCGGTTGCGGTGTTCGTTCGCTTCGGTACTTGGTTGAAGCTGAGGCTGATTTTGTTGCTGCCAATGATGCCAATGATAGCTATGGAAGCACCATTGCAGAGAATTTGTCGAGGGTGAAGAAGGGTTCTTGTGATGAGAGTGGAGAGAGATGGAAGGTTACTCATTTGGAGGCTAATCGTGTGATGGTGGATTATTATCTTCAAAAGAGTTTTTTTGATTTCATTGATGTTGATTCTTTTGGGAGTGATTCATCTTTCTTGAGGTCTGCCATGAATGCTTTGAGGCTGGGTGGTTTGCTCTATGTGACTTCTACTGATGGATACTCTTCTGGTGGACACCGTCCCCATCATTCTTTAGCTGCATATGGAGCCTATGTACGCCCTATGCCATATTCGAATGAGGTTGGTTTGCGAATGCTTATAGGTGGAGCTGCCAGGGAGGCTGCAGTGTTAGGGTATCATATTACTCCCTTGTTTTCGTACTATGCGTATCACGGACCTGTTTTCAGAGTCTTACTCAGATTAAATCGTGGCAAGATTCATGACAGTAGGCATTATGGCTATATTGGTTATTGCCACAAATGTGGAAATTCTCATGAATATTCTTGGGATCAACTTGGTCAGATTAGTTGCTCTTGCAGTATGCCGATGGTTTCAAACTCCCTTGTGGTGTCCGGACCGCTTTGGACCGGACCTCTTCACGATGCTGCATATCTTACGGACATGCTAAATCTAGCCAAGGAGTGGGAATGGGTTGAATGTGACAGTAAAAACAGTCTTGGAAAGCTTATAAACCGAATGATTGATGAAAGTGACCCTAAGTTGCCATTTGGGTATATCAAGTTGGATGAGATGGCAAGCCGCGCAAAAATTAATTCTCCATCTCTAAAGGCCTTGATGAATGCCATGCACCAGGAGGGTTATGCTGCAAGCAGGTCTCACATAGCCACAAATGCAATCAAGACCAATTGCCCCATGACAGAATGCATTAGGATTGCAAAAGAACTATTACAAGTTCCTGTTTCATAA 1308 0.4518 MLTAATLTPLSSSNFRISRNSIPQNPCRSSKVNTFLPNFRGGCKCETQTERGLEFEIGGAFYRQESASGRDLGVLAAFLHKKSNGSLRVLDALCGCGVRSLRYLVEAEADFVAANDANDSYGSTIAENLSRVKKGSCDESGERWKVTHLEANRVMVDYYLQKSFFDFIDVDSFGSDSSFLRSAMNALRLGGLLYVTSTDGYSSGGHRPHHSLAAYGAYVRPMPYSNEVGLRMLIGGAAREAAVLGYHITPLFSYYAYHGPVFRVLLRLNRGKIHDSRHYGYIGYCHKCGNSHEYSWDQLGQISCSCSMPMVSNSLVVSGPLWTGPLHDAAYLTDMLNLAKEWEWVECDSKNSLGKLINRMIDESDPKLPFGYIKLDEMASRAKINSPSLKALMNAMHQEGYAASRSHIATNAIKTNCPMTECIRIAKELLQVPVS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2360 435 PANTHER N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE 11 431 IPR002905 GO:0003723|GO:0004809|GO:0008033
Amo20g2360 435 Pfam N2,N2-dimethylguanosine tRNA methyltransferase 60 425 IPR002905 GO:0003723|GO:0004809|GO:0008033
Amo20g2360 435 ProSiteProfiles Trm1 methyltransferase domain profile. 46 426 IPR002905 GO:0003723|GO:0004809|GO:0008033
Amo20g2360 435 PANTHER TRNA (GUANINE(26)-N(2))-DIMETHYLTRANSFERASE 11 431 - -
Amo20g2360 435 Gene3D - 369 429 IPR042296 -
Amo20g2360 435 Gene3D Vaccinia Virus protein VP39 41 365 IPR029063 -
Amo20g2360 435 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 427 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2360 Amo-Chr20 110256978 110260406 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2360 K00555 - gmx:100788340 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2360 20 110256978 110260406 Amo20g2360 20 110256978 110260406 ECH
Amo10g1854 10 66284972 66287827 Amo20g2360 20 110256978 110260406 hybridization